Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0345 ATGAAATTTGAAAAGGGAAGTAAAGTGGAAGTCCTTGCCAATACTAAGGAACTTTGTGTGGAATGGCGTTGTGCTCGTATTGTTTCTAGTAACAGGCATACTTACAGTGTTCAGTATGATGGTTCTAGAATGACAAATGAGGCGGGTGTGGAGAGAGTACCAAGGAAGGCCATCAGACCATGCCCTCCTCTTGTTAAAGGTACCAAGAGATGGGAAGCTAATGATGTTATGGAGGTTTATGATGATGGTTCTTGGACAGCGGCTATTGTTTTGAAGTTCCTTGGTGGAGACTTTTATTTGGTAAGGTTGTTCATATCATGCAAGGAGTTAGAGGTCCACAGAGCAAACATGAGAATACGCCAATCTTGGCAAAATGGTGAATTTGTCGTCAAGCCAATGGTACCAGACAATTCTGGAGTTGGGAGGTCTAACTGGAGCTTGATTTCAAACAGTTGTAAGGTGATGCCTGAAGTTCAGCATCCCAGTATTGAAACAAGTCAACAAGGCAGTAACGACTGTTGTCTCTGGGAGCCTCGTCCAGCCTCATCTACAACATTGAAGAGAGTGTCGCCTTACTGTTCTTCTCCTGTTGAGGCTTATCCCAGAAAAATCAGGGTTGTTATGAAAAAGGGTGGATGTGAAAGATTCAAAGCTTTGTACACAGCCCCCTTGATGGGAAAGGTAGATGCTTTTGCTTACCCACAAAATGATATGGGTGAAAATTGCATGCTTGCTTCCTTTACTAATGGTTCCAACCAATATCATCTAATGGGGAAGGAAAACCATTCTAATGTCAAAACTCAATTTCTTGAGCGAATTGAAGAACCAGATTATTCTTGTAGTGATCTGAGTTCAGTCGGCAGTTGTAGTGTGATAAGTAATAATACAAATAAATTTTACAGTGATATGTTAGCAGGTCCTTGCCAAGATGGAGACGCCCTTTCTAGTGATGCAGAGTCTCTAGATACTTCTAGGGATAATGGATGCCCCATTTCTCCAAGAGAGGTTATAGCAGAAAGAATTCATAGGTTAGAGTTGCATGCTTATCGCAGTACCCTAGAGGTAATGTATGCTTCTAGTCGTTTAAGTTGGGAACAAGAAGAATTATTGACTGATCTTCGTATTTCACTCCATATTTCAAATGATGAACATTCAATGGAGTTAAAGAAATTAGTTTCAGCTTGTCCACATCTTTAA 1197 0.4077 MKFEKGSKVEVLANTKELCVEWRCARIVSSNRHTYSVQYDGSRMTNEAGVERVPRKAIRPCPPLVKGTKRWEANDVMEVYDDGSWTAAIVLKFLGGDFYLVRLFISCKELEVHRANMRIRQSWQNGEFVVKPMVPDNSGVGRSNWSLISNSCKVMPEVQHPSIETSQQGSNDCCLWEPRPASSTTLKRVSPYCSSPVEAYPRKIRVVMKKGGCERFKALYTAPLMGKVDAFAYPQNDMGENCMLASFTNGSNQYHLMGKENHSNVKTQFLERIEEPDYSCSDLSSVGSCSVISNNTNKFYSDMLAGPCQDGDALSSDAESLDTSRDNGCPISPREVIAERIHRLELHAYRSTLEVMYASSRLSWEQEELLTDLRISLHISNDEHSMELKKLVSACPHL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0345 398 Pfam Agenet domain 6 63 IPR008395 -
Lal21g0345 398 SMART ENT_2 337 396 IPR005491 -
Lal21g0345 398 Pfam ENT domain 340 392 IPR005491 -
Lal21g0345 398 SUPERFAMILY ENT-like 339 393 IPR036142 -
Lal21g0345 398 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 337 398 IPR005491 -
Lal21g0345 398 PANTHER PLANT TUDOR-LIKE RNA-BINDING PROTEIN-RELATED 1 265 - -
Lal21g0345 398 SMART agenet_At_2 1 66 IPR014002 -
Lal21g0345 398 SMART agenet_At_2 69 125 IPR014002 -
Lal21g0345 398 Gene3D ENT domain 332 394 IPR036142 -
Lal21g0345 398 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0345 Lal-Chr21 2347570 2358271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0345 - - lang:109327965 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0242 17 1502317 1506387 Lal21g0345 21 2347570 2358271 LSH
Lal21g0345 21 2347570 2358271 Lal4g0226 4 1425495 1429765 LSH