Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0344 ATGGAAGCTACTGGTGAAATGGTTGCTGGTTCTCATAAAAGGAACGAGCTCGTTCGAATTCCTCACGATTCTTCTGAAACTCTGCCTAAACCGTTGAAAAGTTTGAATGGTCAGATCTGTCAAATCTGTGGTGATAGTGTTGGATTAACTGCCACTGGTGATGTGTTTGTTGCTTGCAATGAGTGTGCCTTCCCGGTTTGTCGTCCTTGTTATGAATACGAGCGAAAGGATGGCAATCAGGCTTGCCCTCAGTGTAAGACTAGATACAAAAGGCATAGAGGGAGTCCTCGAGTGGACGGAGATGAGGATGAGGATGATGGTGATGATCTCGAGAATGAGTTTAGTCATGGTCAAGGAAATCCTTCCAAGGCAAGGACACGGTGGGACGAAGATGCTGACCTCTCTTCGTCTTCTAGACGTGATCCTCGACAACCAATTCCACTTCTCACCAATGGCCAGCCGATGTCTGGTGAGATTCAAACACCCGATACTCAATCCGTGCGAACTACATCTGGTCCTTTGGGTCCATCTGAAAAGCTTCACTCACTCCCCTATATTGATCCAAGGCAACCAGTTCCAGTAAGAATTGTTGATCCATCAAAGGACTTAAATTCTTATGGTCTGGGAAATGTTGATTGGAAAGAAAGGGTTGAAGGTTGGAAACTCAAGCAGGAGAAAAATGTGGTGCAAATGACTGGTAGATACAGTGAAGGGAAAGGTGGAGACATTGAAGGGACTGGTTCTAATGGAGAAGAACTTCAAATGGTTGATGATGCTCGGCAGCCTTTGAGTCGTGTGGTGCCTCTTCCTTCATCTCAGATCACCCCTTACCGTGTTGTTATCATACTCCGGCTGATTATTCTTTGCTTCTTCTTACAATACCGTGTAACTCACCCAGTGAAAGATGCATATCCACTGTGGTTGACATCAGTTATTTGTGAGATTTGGTTTGCCTTATCCTGGCTCTTGGATCAGTTTCCAAAATGGTATCCCATTAATCGCGAGACTTATCTTGACAGGCTTGCTTTAAGATATGATCGTGAAGGAGAACCATCACAGCTGGCTCCTGTTGATGTTTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCTCTTGTAACTGCAAACACAGTTTTGTCTATACTTTCTGTTGATTACCCTGTCGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCAGCTATGTTGACCTTTGAATCCCTATCAGAAACAGCTGAGTTTGCAAAGAAGTGGGTGCCCTTTTGCAAGAAGCACAATATTGAGCCAAGAGCTCCTGAGTTTTATTTTGCCCAGAAGATTGATTACTTGAAGGACAAGATTCAACCTTCTTTTGTGAAGGAGCGACGGACAATGAAGAGAGAATATGAAGAATTCAAAGTACGGATCAATGCCCTTGTAGCCAAAGCACAGAAGATGCCAGAAGAAGGTTGGACAATGCAGGATGGAACTGCTTGGCCAGGAAATAATCCTCGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGCCATAGTGGAGGGCTTGATACAGATGGAAATGAGCTACCTAGACTTGTTTACGTTTCTCGTGAGAAGCGACCAGGCTTCCAACATCACAAGAAGGCCGGAGCTATGAATGCCTTGATTCGAGTATCTGCTGTCTTGACCAATGGTGCTTATCTTTTGAACGTCGATTGTGATCACTATTTCAATAATAGCAAAGCTGTTAAAGAAGCCATGTGTTTCATGATGGATCCTGCTTTTGGAAAGAAGACATGCTATGTACAATTCCCTCAGAGGTTCGATGGCATTGACTTGCACGATCGATATGCCAATCGCAATATTGTGTTCTTCGATATCAACTTGAAAGGTCTCGATGGTATTCAGGGCCCAGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGCAGGCTTTGTATGGTTATGATCCTGTTTTGACTGAGGAAGATTTGGAGCCTAACATTATTGTTAAGAGTTGTTGTGGTTCTAGAAAGAAGGGAAGGGGTGGCAGGAAGTACAATGACAAGAAGAGGGGAGTTAAAAGAACTGAATCAACCATACCAATCTTCAATATGGAAGACATAGAGGAGGGTGTTGAAGGGTATGATGAAGAAAGGTCACTTCTTATGTCTCAAAAGCGTTTGGAGAAGCGTTTTGGTCAGTCTCCAGTTTTTATTGCTGCCACCTTTATGGAACAGGGTGGCATTCCACCTTCAACCAACCCTGCAACTCTTCTTAAGGAGGCAATCCATGTTATCAGCTGTGGCTATGAAGACAAGACAGAATGGGGAAAAGAGATTGGATGGATCTATGGTTCTGTTACTGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATCTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCCATCAATCTTTCTGACCGTCTCAATCAGGTGCTTCGATGGGCCTTGGGTTCAATTGAGATCTTCCTGAGCAGGCATTGTCCCCTGTGGTATGGCTACAAGGGGAAGTTGAGGTCTCTGCAGAGACTTGCTTATATTAACACCATCGTCTACCCACTTACCTCAATCCCATTGATTGCTTACTGTGTGCTTCCTGCATTTTGTCTTATCACAAATAAATTTATTATTCCTGAGATAAGTAACATTGCCAGCATGTGGTTCATTCTTCTCTTCGTCTCCATTTTTACCACTTCAATTCTCGAGCTTAGGTGGAGTGGAGTCAGTATAGAAGACTGGTGGAGGAATGAACAGTTCTGGGTTATCGGTGGGACGTCTGCTCATCTTTTTGCTGTGTTCCAAGGGTTGCTGAAAGTTCTTGCTGGGATCGACACAAATTTTACTGTTACTTCAAAGGCATCTGATGAAGATGGGGACTTTACAGAGCTTTATGTGTTTAAATGGACTTCACTTCTTATCCCTCCTACTACAGTCCTTATTGTGAATTTAATAGGGATTGTGGCTGGTGTGTCCATCGCCATAAACAGTGGTTACCAGTCCTGGGGTCCACTATTTGGTAAGTTGTTCTTTGCTATTTGGGTCATTGCTCATCTATACCCATTCTTGAAGGGTCTGTTGGGTAGGCAAAATCGTACCCCGACCATCGTTATTGTTTGGTCCTTTCTACTTGCTTCTATATTCTCCTTGCTATGGGTCAGGATTGATCCCTTCACCAAAGATACAAACGCAGCATCCAATGGTCAATGTGGCATCAACTGTTAG 3249 0.4386 MEATGEMVAGSHKRNELVRIPHDSSETLPKPLKSLNGQICQICGDSVGLTATGDVFVACNECAFPVCRPCYEYERKDGNQACPQCKTRYKRHRGSPRVDGDEDEDDGDDLENEFSHGQGNPSKARTRWDEDADLSSSSRRDPRQPIPLLTNGQPMSGEIQTPDTQSVRTTSGPLGPSEKLHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNVVQMTGRYSEGKGGDIEGTGSNGEELQMVDDARQPLSRVVPLPSSQITPYRVVIILRLIILCFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFESLSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRTMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKAVKEAMCFMMDPAFGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCCGSRKKGRGGRKYNDKKRGVKRTESTIPIFNMEDIEEGVEGYDEERSLLMSQKRLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYKGKLRSLQRLAYINTIVYPLTSIPLIAYCVLPAFCLITNKFIIPEISNIASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYVFKWTSLLIPPTTVLIVNLIGIVAGVSIAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSFLLASIFSLLWVRIDPFTKDTNAASNGQCGINC 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0344 1082 Coils Coil 455 475 - -
Lal21g0344 1082 Pfam Cellulose synthase 357 1073 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal21g0344 1082 SUPERFAMILY RING/U-box 26 108 - -
Lal21g0344 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 659 IPR029044 -
Lal21g0344 1082 MobiDBLite consensus disorder prediction 7 23 - -
Lal21g0344 1082 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Lal21g0344 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Lal21g0344 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 657 IPR029044 -
Lal21g0344 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 22 1082 - -
Lal21g0344 1082 MobiDBLite consensus disorder prediction 89 186 - -
Lal21g0344 1082 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Lal21g0344 1082 MobiDBLite consensus disorder prediction 139 176 - -
Lal21g0344 1082 PANTHER CELLULOSE SYNTHASE 22 1082 - -
Lal21g0344 1082 MobiDBLite consensus disorder prediction 123 138 - -
Lal21g0344 1082 Pfam Zinc-binding RING-finger 30 106 IPR027934 -
Lal21g0344 1082 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0344 Lal-Chr21 2340365 2346177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0344 1 1080 Glycosyltransferase AT4G32410 86.439 0.0 1905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0344 K10999 - gmx:100798193 2048.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0344 21 2340365 2346177 Lal21g0344 21 2340365 2346177 ECH
Lal17g0237 17 1465166 1470824 Lal21g0344 21 2340365 2346177 LSH