Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0237 ATGGAAGCTAATGCTGGATTAGTTGCTGGTTCTCATAAACGGAACGAGCTCGTTCGAATTCGCCACGATTCTTCTGAAACCGGGCCTAAACCGTTGAAGAATTTGAATGGACAAATCTGTCAAATATGTGGTGATAGTGTTGGATTAACTGCTGATGGAGATGTATTTGTTGCTTGCAATGAGTGTGCCTTCCCTGTTTGTCGTCCTTGTTATGAATATGAGCGAAAGGATGGCAACCAGGCTTGTCCTCAGTGCAAGACTAGATACAAAAGGCATAGAGGGAGTCCTCGAGTTGACGGAGATGAGGATGAGGATGATGTTGATGATCTCGAGAATGAGTTTAATCATGGCCAAGGAAATTCTTCCAAGGCAAGGACGCAGTGGGACGAAGATGCTGACCTCTCTTTGTCTTCTAGACACGATCCTCGACAACCAATTCCCCTTCTCACAAATGGCCAGCCGATGTCTGGTGAGATACAAACACCTGATACTCAATCTGTGCGAACTACATCTGGTCCTCTGGGCCCATCTGAAAAGCTTCACTCACTCCCCTATATCGATCCAAGGCAACCAGTTCCAGTAAGAATTGTGGATCCAACAAAGGACTTGAATTCTTATGGTCTGGGAAATGTTGACTGGAAAGAAAGGGTTGAAGGTTGGAAACTCAAGCAGGAGAAAAATGCGGTGCAAATGACTGGTAGATACAATGAGGGGAAAGGTGGAGACATTGAAGGGACCGGTTCTAATGGAGAAGAACTTCAAATGGTGGATGATGCTCGACTGCCTTTGAGTCGCGTGGTGCCTCTTCCTTCATCTCAGATCACCCCTTACCGTGTTGTTATCATACTGCGGCTGATTATTCTTTGCTTCTTCTTACAATACCGTGTAACTCACCCTGTGAAAGATGCATACCCACTGTGGTTGACATCAGTTATTTGTGAGATTTGGTTTGCCATATCCTGGCTCTTGGATCAGTTTCCAAAATGGTATCCCATTAATCGCGAAACGTATCTTGACAGGCTTGCTTTAAGATATGATCGTGAAGGAGAACTGTCACAGTTGGCTCCTGTTGATGTTTTTGTTAGTACAGTGGATCCTCTCAAAGAGCCTCCTCTTGTAACTGCAAACACTGTTTTGTCTATACTTTCTGTTGATTATCCTGTCGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCCGCTATGTTGACCTTTGAATCCCTTTCAGAAACAGCTGAGTTTGCAAAGAAGTGGGTGCCCTTTTGCAAGAAGCACAATATTGAGCCAAGAGCCCCTGAATTTTATTTTGCCCAGAAGATTGATTACTTGAAAGACAAGATTCAGCCTTCTTTTGTTAAGGAGCGACGAACAATGAAGAGAGAATATGAAGAATTCAAAGTACGGATTAATGCCCTTGTAGCCAAAGCGCAGAAGATACCAGAAGAAGGTTGGACAATGCAGGATGGAACTGCATGGCCAGGAAATAATCCTAGGGATCATCCTGGAATGATTCAGGTGTTTTTAGGTCATAGTGGAGGGCTTGATACAGATGGAAATGAGCTACCTAGACTTGTTTACGTTTCTCGTGAGAAGCGACCAGGTTTCCAACATCACAAGAAGGCCGGAGCTATGAATGCCTTGATTCGTGTATCTGCTGTCTTGACCAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTATTTCAATAATAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGACCCTGCTTTTGGAAAGAAGACATGCTATGTACAATTCCCTCAGAGATTCGATGGCATTGACTTACACGATCGATATGCCAATCGCAATATTGTGTTCTTCGATATCAACTTGAAAGGACTTGATGGTATTCAGGGCCCAGTCTATGTGGGAACTGGTTGCTGTTTCAATAGGAAGGCTTTATATGGTTATGATCCTGTTTTGACTGAGGAAGATTTGGAGCCTAACATTATTGTGAAGAGTTGTTGTGGTTCTACTAGAAAGAAGGGAAGGGGTGGCAAGAAGAACAATGACAAGAGGGGACTTAAAAGAACAGAGTCGACCACACCTGTCTTTAGTATGGAAGACGTAGAGGAGGGAGTTGAAGGGTATGATGATGAAAGGTTACTTCTTATGTCTCAAAAGAGCTTAGAGAAGCGTTTTGGTCAGTCTCCAGTTTTTGTTGCTGCTACCTTTATGGAACAGGGTGGCATTCCACCTTCAACCAACCCTGCAACTCTTCTTAAGGAAGCAATCCATGTTATCAGTTGTGGTTATGAAGACAAGACAGAATGGGGAAAAGAGATTGGATGGATCTATGGTTCTGTGACTGAAGATATCTTGACTGGGTTTAAGATGCATGCTCGTGGTTGGATTTCCATCTATTGCATGCCACCTCGCCCAGCATTTAAGGGTTCTGCTCCCATCAATCTTTCTGACCGTCTCAATCAGGTGCTTCGGTGGGCCTTGGGTTCAATTGAGATATTCCTGAGCAGACATTGCCCCTTGTGGTATGGCTACCATGGGAAGTTGAGGTCTCTGCAGAGACTTGCTTATATTAACACCATTGTCTACCCCCTTACCTCAATCCCATTGATTGCTTACTGTATTCTTCCTGCATTTTGTCTTATCACAAATAAGTTCATTATTCCCGAGGCAAGTAATTTCCTCTCTCTTTTTTCTGATAAATTTATAAGTAACATTGCCAGCATGTGGTTCATTCTTCTCTTCGTCTCCATTTTTACCACTTCAATTCTTGAGCTTAGGTGGAGTGGAGTCAGTATAGAAGACTGGTGGAGGAATGAACAGTTTTGGGTTATCGGTGGGACATCTGCTCATCTTTTCGCCGTGTTCCAAGGATTGCTGAAAGTTCTTGCTGGGATTGATACAAATTTCACTGTTACTTCAAAGGCATCTGATGAAGATGGGGACTTTGCAGAGCTTTATGTGTTTAAATGGACAACACTTCTTATCCCTCCTACTACGGTCCTTTTTGTGAATTTGATAGGGATTGTGGCTGGTGTGTCCATTGCCATAAACAGTGGTTACCAGTCTTGGGGTCCACTATTTGGGAAGTTGTTCTTTGCTATCTGGGTCATTGCTCATCTATACCCATTCTTGAAGGGTCTATTGGGTAGGCAAAATCGTACTCCTACCATTATTATTGTTTGGTCATTTCTCCTTGCTTCTATATTCTCCTTACTGTGGGTTAGGATTGACCCATTCACCAAAGACAACAAAGCATCCGGTGGTCAATGTGGCATCAACTGTTAG 3282 0.433 MEANAGLVAGSHKRNELVRIRHDSSETGPKPLKNLNGQICQICGDSVGLTADGDVFVACNECAFPVCRPCYEYERKDGNQACPQCKTRYKRHRGSPRVDGDEDEDDVDDLENEFNHGQGNSSKARTQWDEDADLSLSSRHDPRQPIPLLTNGQPMSGEIQTPDTQSVRTTSGPLGPSEKLHSLPYIDPRQPVPVRIVDPTKDLNSYGLGNVDWKERVEGWKLKQEKNAVQMTGRYNEGKGGDIEGTGSNGEELQMVDDARLPLSRVVPLPSSQITPYRVVIILRLIILCFFLQYRVTHPVKDAYPLWLTSVICEIWFAISWLLDQFPKWYPINRETYLDRLALRYDREGELSQLAPVDVFVSTVDPLKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGSAMLTFESLSETAEFAKKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRTMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTAWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAFGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRKALYGYDPVLTEEDLEPNIIVKSCCGSTRKKGRGGKKNNDKRGLKRTESTTPVFSMEDVEEGVEGYDDERLLLMSQKSLEKRFGQSPVFVAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEIFLSRHCPLWYGYHGKLRSLQRLAYINTIVYPLTSIPLIAYCILPAFCLITNKFIIPEASNFLSLFSDKFISNIASMWFILLFVSIFTTSILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTTLLIPPTTVLFVNLIGIVAGVSIAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIIIVWSFLLASIFSLLWVRIDPFTKDNKASGGQCGINC 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0237 1093 Coils Coil 455 475 - -
Lal17g0237 1093 Pfam Cellulose synthase 357 1084 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lal17g0237 1093 SUPERFAMILY RING/U-box 25 112 - -
Lal17g0237 1093 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 21 1093 - -
Lal17g0237 1093 MobiDBLite consensus disorder prediction 149 176 - -
Lal17g0237 1093 PANTHER CELLULOSE SYNTHASE 21 1093 - -
Lal17g0237 1093 CDD mRING-HC-C4C4_CesA_plant 38 88 - -
Lal17g0237 1093 Pfam Zinc-binding RING-finger 30 107 IPR027934 -
Lal17g0237 1093 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 662 IPR029044 -
Lal17g0237 1093 MobiDBLite consensus disorder prediction 1 31 - -
Lal17g0237 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Lal17g0237 1093 MobiDBLite consensus disorder prediction 89 186 - -
Lal17g0237 1093 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Lal17g0237 1093 MobiDBLite consensus disorder prediction 14 28 - -
Lal17g0237 1093 MobiDBLite consensus disorder prediction 669 692 - -
Lal17g0237 1093 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 658 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0237 Lal-Chr17 1465166 1470824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0237 1 1082 Glycosyltransferase AT4G32410 86.531 0.0 1907
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0237 K10999 - gmx:100810567 2017.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0237 17 1465166 1470824 Lal17g0237 17 1465166 1470824 ECH
Lal17g0237 17 1465166 1470824 Lal21g0344 21 2340365 2346177 LSH