Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0306 ATGGGTCACATTGGTTCAAGCAAAGATGCAAATGATTTAGACTTAAATGACATCGACAACGACGATTACTACACCGGATTTTCCTCCGATGAAAACGACGTCGATCTACCTCCAAATCGCGCTCTAGAGGGTTTGACCGAACGAACGGTTAAAAATTTGTGTGATAAAGCTTCAACACTGTTCTTCAAAGAAAACGGTCTCATCAGTCACCAGATCAATTCATTCAATTCCTTCGTCAGTGCTGGGCTTCAGAGCATCTTCGATTCCTTCGGTGAGCTACTTGTTACTCCTGGCTTCGATCCATCAAAGAAAGGTGACAGTGATCACTACCGTTACGCTGCTGTGAAGTTTGGGAAGGTCACGCTTGATAGACCTAAGTTTTGGGGTGGTGAAGGGAATACTCAAGAGTTTAAGATGCTTCCGCGCCATGCGAGGCTTCAGAGGATGACCTATTCTTCTAAGATGAAGATTGATGTTCAAATTCAGGTTTACGTCCCAAAAGTTGTTCGGAGTGACAAATTTAAGACTGGGAAGGAACAATATGTTGATAGAGAGATTCTTAAGGAGGATAGCAGAGATATTATCATTGGCAGGCTGCCTGTCATGGTCATGTCTGATCTTTGTTGGATGAAAGATGCCGATAAACCTGATTGTGAATTTGATCATGGAGGCTACTTCCTTATCAAGGGTGCTGAGAAGACTTTTATTGCGCAAGAGCAAATCTATACAAAGAGGCTCTGGATTATAAACACTCCGTATTGGACAATTGCATACAAGTCACCTATGAAGAGAAATAGGCTGGTCATCAAACTGGTTGGTAATTCAAGAATTGAGGAAGTCAACGGTGGAGAGAAGGTGCTGACTGTCTATTTTCTGTCTGTTGAGGTCCCTGTGTGGATACTCTTTTTTGTTTTTGGTGTCACATCAGACAGAGAGGTTATAGACCTCATTGATTGTGGAAATGGTGATGTCAGGCTTGAAAATATCCTTTCTGCATCCATTCGTGATGTTGATGAGAAATGTGAAGGATTTCGTAAAGGGAAAAATGCCCTGCGTTACCTGGAAGGATTTGTAAAAGGAGTGCAGTTTCCACCTCCAGAATCTATTGAGGAGTGTCTCAACCTTTATGTCTTTCCCAATATAAAAGGCTTGAAGAGAAAGGCCCGCTTCCTGGCATACATGGTTAAGGGTCTCCTGCTAGCTTACAGTGGCCGCAAAAGATCTGACAACAGGGATGATTTTCGGAATAAGAGGATTGAATTGGCTGGTGAGCTGCTTGACCGCGAATTAAGAGTGCACATTGCACATGCTCGCAAGCGAATGGCGAAGGCTCTACAGAGAGACCTTTATGGAGACCGCGAAGTTCGGCCAGTTGAACATTATCTGGATGCTTCCATAATTACCAATGGTCTTCAAAGAGCATTCTCTACTGGAGCATGGTCGCATCCATTTAAAAGGATGGAAAGGGTATCTGGTGTGGTGGCAACTCTTGGGCGCACTAATCCTTTGCAAACCATTGCTGAACTGCGTAGGACCAGGCAGCAAGTTCAGTATACAGGAAAGGTTGGAGATGCTAGATACCCGCATCCCTCTCACTGGGGCAAGGTTTGCTTCCTCTCTACCCCGGATGGTGAAAATTGTGGGCTTGTAAAAAATTTGGCTGTGACGGGACTAGTGAGTACCAACGTATCTGAATCTATACTGCCTCAGTTGATTGAGTGTGGATTGGAAGAGCTTGTAGACGATACTTCTACTTATCTTGGCAAAAAGGATAAAGTCTTCCTTAATGGGGATTGGGTTGGAGTTTGTGCAAATTCTATTTCATTTGTGGATGAGCTGAGACGCAAAAGACGAACAAATCAATTGCCTCATCAGGTGGAAATAAAAAGAGACCAGAGTCAACAAGAAGTGCGTGTATACTCTGATGCAGGAAGGATTTTGCGTCCACTTTTGGTTGTTGATAATCTATACAAGACTAAGGAATCCAAAGGATCTAAATGGGAGCCTGTTTCTTTCCAGTCTCTACTGGAAAATGGTGTAATTGAGCTCGTGGGACATGAGGAAGAGGAAGATTGCTGTACTGCTTGGGGTGTTCAGTATTTATTCAGAAAGGAGGGCAAATCTTCTGTGAAGTACACACACTGCGAACTTGATATGTCATTCTTGTTGGGTTTCAGCTGTTCGCTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTGCTGTACCAATCACAGAAGCACTCCTCGCAGGCAATTGGTTTCTCTACTTTAAATCCAGACATTCGAGTTGATACTTTGTCACACCAATTAAATTATCCTCAGAAGCCCTTATTTCGAACAATGACATCTGATTGTCTTGGGAAACCAGGATATTCAGAAGTTCAAAATAGAATACTGCCCAAGGCCGAATTCTACAATGGGCAGAATGCCATTGTTGCTGTCAATGTTCATCTGGGTTATAATCAAGAGGATTCCTTGGTGATGAACCGTGCTTCCTTACAACGTGGTATGTTCAGATCTGAGCACGTAAGGAGTTACAGAGCTGAAATTGAAAATAAGGAATCTTCTGAAAAGAAGCGGAAGCCTGAAGACATTGTAAATTTTGGAAAAATGCATAGCAGAATCGGTAGAGTTGATAGCCTCGATGATGATGGCTTTCCATTTGTTGGTGCCAATTTGCAGAGTGGTGATATCATTATTGGGCGGTGTGCTGAGTCTGGGACGGACCATAGTATCAAGCTCAAACACACTGAAAGGGGTTATGTTCAGAAGATTGTGCTGTCCTCAAATGATGAGGGGAAGAATTTTGCTGTGGTTTCTTTAAGACAGGTTAGAACTCCGGTGCTTGGAGACAAGTTTTCAAGTATGCATGGACAAAAGGGTGTGTTGGGATTTTTGGAGTGTCAAGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATTGTTATAAATCCTCATGCATTTCCTTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGGAAGGGGATTGCTTTGGGTGGTTCATTGAGGCATGCTACCCCTTTCTCCACCCCCTCTGTTGATGCCATCACAGACCAGCTTCACAGGGCTGGGTTTTCAAGATGGGGTAATGAAAGAGTATACAATGGTAGAACTGGTGAGATGGTGCGGTCACTCATCTTTATGGGTCCAACCTTCTATCAGAGGCTACATCATATGTCTGAAGACAAGGTGAAATTTCGAAACACTGGCCCAGTTCATCCGTTGACCCGACAGCCTGTGGCTGACAGGAAGCGATTTGGAGGTATCAAATTTGGTGAAATGGAGCGTGATTGCCTGATAGCTCATGGTGCATCTGCCAACCTGTATGAACGCCTCTTCACTTTGAGCGACTCATCTCAGATACACATTTGTAGCAAATGCAAAAATGTTGCAAATGTGATCTTACGACCAGTGTCTGGTGGCCGTAAAATAAGGGGTCCTTACTGCCGCAGCTGTGAGTCTGTGGATGATATCGTGGTGGCCAATGTCCCATATGGAGCTAAGTTATTGGTCCAGGAGCTTTTCAGCATGGGCATAAGTCTCAAATTTGAAACCAAACTCTGCTAG 3606 0.4379 MGHIGSSKDANDLDLNDIDNDDYYTGFSSDENDVDLPPNRALEGLTERTVKNLCDKASTLFFKENGLISHQINSFNSFVSAGLQSIFDSFGELLVTPGFDPSKKGDSDHYRYAAVKFGKVTLDRPKFWGGEGNTQEFKMLPRHARLQRMTYSSKMKIDVQIQVYVPKVVRSDKFKTGKEQYVDREILKEDSRDIIIGRLPVMVMSDLCWMKDADKPDCEFDHGGYFLIKGAEKTFIAQEQIYTKRLWIINTPYWTIAYKSPMKRNRLVIKLVGNSRIEEVNGGEKVLTVYFLSVEVPVWILFFVFGVTSDREVIDLIDCGNGDVRLENILSASIRDVDEKCEGFRKGKNALRYLEGFVKGVQFPPPESIEECLNLYVFPNIKGLKRKARFLAYMVKGLLLAYSGRKRSDNRDDFRNKRIELAGELLDRELRVHIAHARKRMAKALQRDLYGDREVRPVEHYLDASIITNGLQRAFSTGAWSHPFKRMERVSGVVATLGRTNPLQTIAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNVSESILPQLIECGLEELVDDTSTYLGKKDKVFLNGDWVGVCANSISFVDELRRKRRTNQLPHQVEIKRDQSQQEVRVYSDAGRILRPLLVVDNLYKTKESKGSKWEPVSFQSLLENGVIELVGHEEEEDCCTAWGVQYLFRKEGKSSVKYTHCELDMSFLLGFSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPDIRVDTLSHQLNYPQKPLFRTMTSDCLGKPGYSEVQNRILPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHVRSYRAEIENKESSEKKRKPEDIVNFGKMHSRIGRVDSLDDDGFPFVGANLQSGDIIIGRCAESGTDHSIKLKHTERGYVQKIVLSSNDEGKNFAVVSLRQVRTPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGSLRHATPFSTPSVDAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRSCESVDDIVVANVPYGAKLLVQELFSMGISLKFETKLC 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0306 1201 Gene3D RNA polymerase alpha subunit dimerisation domain 1085 1199 - -
Lal21g0306 1201 Gene3D - 758 947 IPR014724 GO:0003899
Lal21g0306 1201 Gene3D - 410 580 - -
Lal21g0306 1201 Gene3D - 60 242 - -
Lal21g0306 1201 Pfam RNA polymerase Rpb2, domain 5 672 718 IPR007647 GO:0006351
Lal21g0306 1201 Pfam RNA polymerase Rpb2, domain 7 1100 1198 IPR007641 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 Pfam RNA polymerase Rpb2, domain 4 593 654 IPR007646 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 53 1198 - -
Lal21g0306 1201 CDD RNA_pol_B_RPB2 67 1197 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal21g0306 1201 Gene3D RNA polymerase Rpb2, domain 2 254 409 IPR037034 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 39 1198 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal21g0306 1201 Pfam RNA polymerase beta subunit 66 457 IPR007644 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 Pfam RNA polymerase Rpb2, domain 6 727 1098 IPR007120 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 Gene3D - 728 1084 IPR037033 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 ProSitePatterns RNA polymerases beta chain signature. 951 963 IPR007121 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 Pfam RNA polymerase Rpb2, domain 2 281 420 IPR007642 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 Pfam RNA polymerase Rpb2, domain 3 497 556 IPR007645 GO:0003677|GO:0003899|GO:0006351
Lal21g0306 1201 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 39 1198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0306 Lal-Chr21 2023063 2029393 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0306 - K16252 gmx:100815934 2014.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0306 21 2023063 2029393 Lal21g0306 21 2023063 2029393 ECH
Lal17g0202 17 1212232 1219449 Lal21g0306 21 2023063 2029393 LSH