Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0202 ATGGGTCACGTTGGTTCAAGCAAAGATCCCAAATTTTCAAACACAGAGAAAGATTTAGACTTATTGGACATCGACAACGATGATTACTACACTGGCTTCTCCTCTGACGAAAGCGACGTCGTCGATATCGATCTACCTCCAAATCGCGCACTCGAGGGTTTAGGCGAAACAACGGTAAAAAACTTCTGCCACAAAGCTTCAACATTGTTCTTCAAAGAAAACGGTCTCATTAGTCATCAAATAAATTCCTTCAACTCTTTCACTAGTAATGGGATTCAGAGCATCTTCGATTCCTTCGGTGAACTCCTCGTTACTCCAGGATTCGATCCATCGAAGAAAGGTGACAGTGATCACTACCGTTACGCTGCGGTGAAGTTTGGGAAGGTTACACTTGAAAGACCTAAGTTTTGGGGAGGTGAAGGGAACACACAAGAGTTTAAGATGCTTCCGCGGCATGCGAGGATTCAGAGGATGACTTATTCGTCGAAGATGAAGATCAATGTGCAAATTCAGGTTTACGTCCCAAAAGTTATTCGAAGTGACAAATTTAAGACTGGGAAGGATCAATATGTTGACCGAGAGATTTTGAAGGAAGACAGTAGAGACATAATCATTGGGAGGCTGCCTGTCATGGTTATGTCTGATCTATGCTGGATGAAAGATGCTAGCAAACCTGATTGTGAATTCGATCATGGAGGCTACTTCCTCATCAAGGGTGCTGAGAAGACTTTTATTGCACAGGAGCAAATCTACACAAAGAGGCTCTGGGTTATTAACAGTCCACATTGGACAATTGCATACAAGTCACCTATGAAAAGATATAGGCTGGTCATCAAACTTGTTGGTAATTCAAGAATTGAGGAAATCAACAGTGGAGAGAAGATGCTGACTGTCTACTTTCTGTCTGTTGAGATCCCTGTGTGGATACTTTTTTTCATTCTTGGTGTCACCTCAGACAAAGAGGTTATAGATCTCATTGATTGTGGAAATGGTGATGCCCGGCTTGAAAATATACTTTCTGCATCCATCCGTGACGCAGATGAGAAATGTGAAGGATTTCGTAACGGGAAGAATGCCCTTCATTACCTGGAAGGATTTGTAAAAGGGGTACAATTTCCACCTCCAGAATCTATTGAGGAGTGTCTCGACCTTTACGTCTTTCCCAATATAAAAGGCTTGAAGAGAAAGGCACGCTTCTTGGCATACATGGTTAAGGGTCTCCTGCTAGCTTACAGTGGTCGCAAAAGATCTGATAACAGGGATGATTTTAGGAATAAGAGGATTGAATTGGCTGGGGAGCTGCTTGAACGCGAGTTAAGAGTGCACATTGCACATGCTCGCAAGCGAATGGCAAAGGTTCTACAGAGAGACCTTTATGGAGATCGCGAAGTACGGCCAGTTGAACATTATCTGGATGCTTCCATAATTACCAATGGTCTTCAAAGAGCATTCTCTACTGGAGCATGGTCACATCCCTTTAAAAGGATGGAAAGGGTATCCGGTGTGGTGGCGAATCTTGGGCGCACTAATCCTTTGCAAACCGCTGCTGATCTGCGAAGAACCAGGCAGCAAGTTCAGTATACAGGAAAGGTTGGAGATGCTAGATACCCGCATCCTTCTCACTGGGGAAAGGTTTGCTTCCTCTCTACCCCGGATGGTGAGAATTGTGGGCTTGTAAAAAATTTGGCTGTGACAGGACTAGTGAGTATCAACATATCTGAACCTATACTGCCTCAATTGATTGAGTGTGGATTGGAAGAACTTGCAGATGATACTTCTACTTATCTGGGAAAAAAGGATAAAGTCTTTCTTAATGGGGATTGGGTTGGAGTTTGTGCAAATTCTATTTCATTTGTGGGTGAGCTGAGACGCAAAAGACGAACAAATCAATTGCCTCATCAGGTGGAAATAAAAAGAGACCAGAGTCAACAAGAGGTGCGTGTATACTCTGATGCAGGAAGGATTTTGCGTCCGCTTTTGGTAGTTGATAATCTATACAAGATTAAGGAATCTAAAGGATCTAAATGGGAGCCTGATTCTTTCCAGTCTCTACTAGAAAATGGAGTAATTGAGCTCGTGGGACACGAGGAAGAGGAAGACTGTTGTACTGCTTGGGGTGTTCAGTATTTATTCAGAAAGGGGGGCAAATCTTCTGTGAAGTACACGCACTGCGAACTTGATATGTCATTCTTGTTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTCCTGTACCAATCACAGAAGCACTCATCGCAGGCGATTGGCTTCTCTACTTTAAATCCAGACATTAGAGTTGATACCTTGTCACACCAGTTAAACTATCCCCAGAAGCCCCTGTTCCGAACAATGACATCTGATTGTCTTGGGAAACCCGGATATTCAGAAGTTCAAAATAGAATACTGCCCAAAGCTGAATTCTACAATGGGCAGAATGCCATTGTTGCTGTCAATGTTCATCTGGGTTATAATCAAGAGGATTCCTTGGTGATGAACCATGCTTCCTTACAACGTGGTATGTTCAGATCTGAGCATGTAAGGAGTTACAAAGCTGAAATTGAAAATAATGAATCTTCTGAGAAGAAGCGGAAGCCTGAAGACATTGTAAATTTTGGAAAGATCCACAGCAAGATTGGTAGAGTTGATAGCCTTGACGATGATGGCTTTCCATACATTGGTGCAAATTTGCAAAGTGGTGATATCATTATTGGGCGGTGTGCTGAGTCTGGGGTGGACCATAGTATTAAGCTGAAACACACTGAAAGGGGCTATGTTCAGAAGGTTGTGCTGTCCTCAAATGATGAGGGGAAAAATTTTGCGGTGGTTTCTTTGAGACAGGTTAGAACTCCAGTGCTTGGAGACAAGTTCTCAAGCATGCATGGGCAAAAAGGTGTGTTGGGATTTTTGGAGTGTCAGGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATTGTCATAAATCCACATGCATTTCCCTCACGTCAAACTCCTGGGCAACTCTTAGAGGCTGCTTTAGGGAAGGGCATTGCTTTGGGTGGTTCATTGAGACATGCTACCCCGTTCTCCACTCCTTCAGTTGATGCCATAACGGACCAGCTTCACAGAGAAGGGGGCTTGTATTTTAACTTTGCTCTTGCTTCTTACTCTGACTATTGTGTTGTTTCTTTCCTATTTGCAAATAATGTCTGCTCAGTTGTTGATGGTCTCTTTCCTTTGCTCCTTTCCCAAGCTGGGTTTTCAAGATGGGGTAACGAGAGAGTCTACAATGGGAGAACTGGTGAGATGGTCCGCTCACTCATCTTTATGGGTCCAACATTCTATCAGAGATTGCACCACATGTCTGAAGACAAAGTGAAATTCCGGAACACTGGTCCTGTTCATCCATTGACCCGACAGCCCGTGGCGGACAGGAAGCGATTTGGAGGTATAAAGTTTGGTGAAATGGAGCGTGATTGCCTTATAGCTCATGGTGCGTCAGCAAACCTGTATGAACGCCTCTTCACACTGAGTGACTCATCTCAGATACACATTTGTAGCAAATGCAAAAATGTTGCAAATGTGATCTTACGTCCAGTGTCTGGTGGCCGTAAAATAAGGGGTCCATACTGCCGTGGCTGTGAATCTGTGGATGACATTGTCGTGGCCAATGTCCCATATGGAGCTAAATTATTGGTCCAGGAGCTTTTCAGCATGGGCATAAGTCTCAAATTTGAAACCGAACTCTGCTAG 3756 0.4358 MGHVGSSKDPKFSNTEKDLDLLDIDNDDYYTGFSSDESDVVDIDLPPNRALEGLGETTVKNFCHKASTLFFKENGLISHQINSFNSFTSNGIQSIFDSFGELLVTPGFDPSKKGDSDHYRYAAVKFGKVTLERPKFWGGEGNTQEFKMLPRHARIQRMTYSSKMKINVQIQVYVPKVIRSDKFKTGKDQYVDREILKEDSRDIIIGRLPVMVMSDLCWMKDASKPDCEFDHGGYFLIKGAEKTFIAQEQIYTKRLWVINSPHWTIAYKSPMKRYRLVIKLVGNSRIEEINSGEKMLTVYFLSVEIPVWILFFILGVTSDKEVIDLIDCGNGDARLENILSASIRDADEKCEGFRNGKNALHYLEGFVKGVQFPPPESIEECLDLYVFPNIKGLKRKARFLAYMVKGLLLAYSGRKRSDNRDDFRNKRIELAGELLERELRVHIAHARKRMAKVLQRDLYGDREVRPVEHYLDASIITNGLQRAFSTGAWSHPFKRMERVSGVVANLGRTNPLQTAADLRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSINISEPILPQLIECGLEELADDTSTYLGKKDKVFLNGDWVGVCANSISFVGELRRKRRTNQLPHQVEIKRDQSQQEVRVYSDAGRILRPLLVVDNLYKIKESKGSKWEPDSFQSLLENGVIELVGHEEEEDCCTAWGVQYLFRKGGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTLNPDIRVDTLSHQLNYPQKPLFRTMTSDCLGKPGYSEVQNRILPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNHASLQRGMFRSEHVRSYKAEIENNESSEKKRKPEDIVNFGKIHSKIGRVDSLDDDGFPYIGANLQSGDIIIGRCAESGVDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRTPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIALGGSLRHATPFSTPSVDAITDQLHREGGLYFNFALASYSDYCVVSFLFANNVCSVVDGLFPLLLSQAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRGCESVDDIVVANVPYGAKLLVQELFSMGISLKFETELC 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0202 1251 Pfam RNA polymerase Rpb2, domain 2 286 429 IPR007642 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 CDD RNA_pol_B_RPB2 76 1247 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal17g0202 1251 Pfam RNA polymerase beta subunit 75 466 IPR007644 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 Pfam RNA polymerase Rpb2, domain 5 681 727 IPR007647 GO:0006351
Lal17g0202 1251 Pfam RNA polymerase Rpb2, domain 4 602 663 IPR007646 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 Gene3D - 69 251 - -
Lal17g0202 1251 Gene3D - 419 592 - -
Lal17g0202 1251 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 46 1046 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal17g0202 1251 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 1083 1248 IPR015712 GO:0003899|GO:0006351|GO:0032549
Lal17g0202 1251 Gene3D RNA polymerase Rpb2, domain 2 263 418 IPR037034 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 Gene3D - 1068 1126 IPR037033 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 Pfam RNA polymerase Rpb2, domain 3 506 565 IPR007645 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 Gene3D - 767 956 IPR014724 GO:0003899
Lal17g0202 1251 Pfam RNA polymerase Rpb2, domain 6 736 1148 IPR007120 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 60 1249 - -
Lal17g0202 1251 Pfam RNA polymerase Rpb2, domain 7 1150 1248 IPR007641 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 46 1046 - -
Lal17g0202 1251 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 1083 1248 - -
Lal17g0202 1251 Gene3D RNA polymerase alpha subunit dimerisation domain 1135 1249 - -
Lal17g0202 1251 ProSitePatterns RNA polymerases beta chain signature. 960 972 IPR007121 GO:0003677|GO:0003899|GO:0006351
Lal17g0202 1251 Gene3D - 737 1046 IPR037033 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0202 Lal-Chr17 1212232 1219449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0202 - K16252 gmx:100815934 1984.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0202 17 1212232 1219449 Lal17g0202 17 1212232 1219449 ECH
Lal17g0202 17 1212232 1219449 Lal21g0306 21 2023063 2029393 LSH