Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0283 ATGGGTATTGAAAGAACACATTGGGTCATAATTGTAGTATGGCTTATTTTATTTGGAGAAAAAATGATGCTTGTTAATGGTAACTTTAATTATAAGGATGCTCTTACCAAGTCCCTTATTTTCCTAGAGGCACAAAGATCAGGGAAGCTACCTTCCAATAACAGGGTTCCTTGGAGAGGAGACTCAGCACTTGATGATGGAAAACTTGCTAATGTGGATCTTTCTGGAGGATACTATGATGCAGGAGATAATATAAAATTTGGTCTCCCTATGGCATTCACTATTACTACTCTATCATGGTCTGCACTTTTTTACAAGCAAGAATTACAAGCTTCAAAGGAATTAGGACATGTTCAAGATGCCATCAAATGGGGTACTGATTATTTTCTGAAATGCAGTCAAAATGATAAATTATATGTTCAGGTAGGGGACCCAGAAGAGGATCACAAATGTTGGGTTAGACCAGAAAAAATGAAAACAAAAAGAACAGTTTTGATGATTGATAATAAAACTCCTGGGACTGAGATTGCAGCTGAAACTGCAGCAGCAATGGCTGCTGCTTCTATTGTCTTTAGGCCCGTTGATCAAGAATATTCCAATCGTCTCCTCAACAAAGCCAAACTGCTTTTTGAATTTGCAAAATCACATAAAGGAACCTATGATGGAGAGTGTCCTTTCTATTGCTCTTACTCTGGCTATAATGATGAACTAATGTGGGCAGCAACATGGTTATACTATGCTACACAGAGTCAAATGTACATGAAATACATACAAGATGATGCTATCAGTGCTAGTGTAGGAGAATTTAGTTGGGACCTTAAATATGCTGGAGCACAAATCCTTCTAACCCAGTTATATTTTCAAGGACAGAAGGATCTTGAAGAATTCAAAATCCATGGTGATAGTTTCATATGTACAGTGCTTCCTGATAGTCCGTACAGTCAGATTAGAATGACTCCTGGTGGTTTGATTCATTTGAGAGATGGAGCGAACATGCAGTATGTGACGAGCACAGCTTTCTTGTTCACAGTATATAGTGATGTGCTTCTTAAACATAAAAAGAGTGTCACTTGTGGAAATAAACAATTCACTTCATCCCACCTCTTGGCTTTTGCTAAGAAACAAATTGATTACATACTAGGGGAAAACCCTGAAGGTAGATCATACATGGTAGGATTTGGCAAAAATCCACCAAAACAAGCTCACCATAGAGGTGCTTCAGTGCCAAATTCAGCAAAGAATGAAGTGGCCACTTGTTCTATGAGCTTTGCAAAGTGGTTAAATGTAGATTCACCTAATCCCAATGAGCTCACTGGTGCTATTGTTGGTGGACCTGACAAAAATGACAAGTTTATTGACAAACGCACTACTTCAGCATGTACTGAACCCTGCACTTATGTTAACTCTTTAGCACTTGGACCTCTTGCAAAGCTTGCATCGATTGGTTAA 1449 0.3851 MGIERTHWVIIVVWLILFGEKMMLVNGNFNYKDALTKSLIFLEAQRSGKLPSNNRVPWRGDSALDDGKLANVDLSGGYYDAGDNIKFGLPMAFTITTLSWSALFYKQELQASKELGHVQDAIKWGTDYFLKCSQNDKLYVQVGDPEEDHKCWVRPEKMKTKRTVLMIDNKTPGTEIAAETAAAMAAASIVFRPVDQEYSNRLLNKAKLLFEFAKSHKGTYDGECPFYCSYSGYNDELMWAATWLYYATQSQMYMKYIQDDAISASVGEFSWDLKYAGAQILLTQLYFQGQKDLEEFKIHGDSFICTVLPDSPYSQIRMTPGGLIHLRDGANMQYVTSTAFLFTVYSDVLLKHKKSVTCGNKQFTSSHLLAFAKKQIDYILGENPEGRSYMVGFGKNPPKQAHHRGASVPNSAKNEVATCSMSFAKWLNVDSPNPNELTGAIVGGPDKNDKFIDKRTTSACTEPCTYVNSLALGPLAKLASIG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0283 482 PANTHER ENDO-1,4-BETA-GLUCANASE 13 479 - -
Lal21g0283 482 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 378 404 IPR018221 -
Lal21g0283 482 Gene3D - 25 482 IPR012341 GO:0005975
Lal21g0283 482 Pfam Glycosyl hydrolase family 9 31 472 IPR001701 GO:0004553|GO:0005975
Lal21g0283 482 PANTHER ENDOGLUCANASE 16-RELATED 13 479 - -
Lal21g0283 482 SUPERFAMILY Six-hairpin glycosidases 27 479 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0283 Lal-Chr21 1875331 1878277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal21g0283 5 480 Glycoside Hydrolase AT3G43860 69.311 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0283 K01179 - gmx:100811509 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0283 21 1875331 1878277 Lal21g0283 21 1875331 1878277 ECH
Lal17g0173 17 1043447 1052566 Lal21g0283 21 1875331 1878277 LSH