Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0173 ATGGGTATTGAAAGAGCACTTCGGGCCATCATTGTAGTAATGTTTACATTGTTTGGAGGAAATTTGATGGTTGTTAATGGTGATTTTAATTATAAGGATGCTCTCACCAAATCCATTATTTTCCTAGAGGCACAACGATCAGGGAAGCTCCCTTCCAATAACAGGGTTTCTTGGAGAGGAGACTCAGCACTTGATGATGGAAAACTTGCTAATGTGGACCTTTCTGGAGGATACTATGATGCAGGAGATAATGTAAAGTATGGTCTCCCTATGGCATTCACTGTTACAACTTTATCATGGGCTGCACTTTTTTATAAACAAGAATTACAAGCTACAAAGGAATTGGGACATGTTCAAGATGCCATTAAATGGGGTACCGATTATTTTCTGAAATGCAGCCAGCATAAAAAATTATATGTGCAGGTAGGGGACCCAGATGAGGATCACAAATGTTGGGTTCGACCAGAAAATATGAAAACAAAAAGAACAGTTTTGTTGATTGATAATAACACTCCAGGGACTGAGATTGCAGCTGAAACTGCAGCAGCAATGGCTGCTGCTTCTATTGTCTTTAGGCCCATTGATCGCAAGTATGCACGTCGTCTACTCAACAGAGCCAAACTGCTTTTTCAATTTGCAAAATCACATAAGGGAACCTATGATGGAGAGTGTCCCTTCTACTGCTCTTTCTCGGGTTATAATGACGAGCTGATGTGGGCAGCAACATGGTTATACTATGCAACCCTAAAGCCAATGTATATGAAGTACATTCAGGAAGATGCTATAAGTGCTAGTGTAGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTAACCCAGTTACATTTTCAAGGACACAAAGATCTGGAAGAATTCAAAATACATGGTGATAGTTTCATATGCTCAGTCCTTCCTGAGAGTCCCTACAATCAGATTAAATTGTCTCCTGGTGGCTTGCTTCATGTAAGAGATGGAGCCAACATGCAGTATGTGACCAGCACAGCTTTCTTGTTCACTGTATATAGTGATTTACTTGCCAAACATAAACAGAAAGTCACTTGTGGAGAGAAACAATTCTCCTCATCCCACCTCTTGTCTTTTGCTAAGAAACAAATGGATTATATGCTAGGGAAAAACCCTGAAGGTAGATCCTACATGGTAGGATTTGGCAAAAACCCACCAAAACAAGCTCACCATAGAGGTGCTTCCGTGCCAAAGGCATCAAAGGACGAAGTTGTAAGTTGTCCCATGAGCTTCACCAAATGGTTAAATGTAGATTCACCTAACCCTAATGAGCTCACTGGTGCTATTATGGGTGGACCTGACAAATATGACAAGTTTGTTGACAAACGTACGGCTTCATCATATACTGAACCATGCACTTACGTTAACTCTCTAGCAGTTGGTCCTCTTGCAAAGCTTGCATCATTGGGTTAA 1449 0.4079 MGIERALRAIIVVMFTLFGGNLMVVNGDFNYKDALTKSIIFLEAQRSGKLPSNNRVSWRGDSALDDGKLANVDLSGGYYDAGDNVKYGLPMAFTVTTLSWAALFYKQELQATKELGHVQDAIKWGTDYFLKCSQHKKLYVQVGDPDEDHKCWVRPENMKTKRTVLLIDNNTPGTEIAAETAAAMAAASIVFRPIDRKYARRLLNRAKLLFQFAKSHKGTYDGECPFYCSFSGYNDELMWAATWLYYATLKPMYMKYIQEDAISASVAEFSWDLKYAGAQILLTQLHFQGHKDLEEFKIHGDSFICSVLPESPYNQIKLSPGGLLHVRDGANMQYVTSTAFLFTVYSDLLAKHKQKVTCGEKQFSSSHLLSFAKKQMDYMLGKNPEGRSYMVGFGKNPPKQAHHRGASVPKASKDEVVSCPMSFTKWLNVDSPNPNELTGAIMGGPDKYDKFVDKRTASSYTEPCTYVNSLAVGPLAKLASLG 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0173 482 PANTHER ENDOGLUCANASE 16-RELATED 14 479 - -
Lal17g0173 482 Gene3D - 25 482 IPR012341 GO:0005975
Lal17g0173 482 PANTHER ENDO-1,4-BETA-GLUCANASE 14 479 - -
Lal17g0173 482 SUPERFAMILY Six-hairpin glycosidases 27 480 IPR008928 GO:0005975
Lal17g0173 482 Pfam Glycosyl hydrolase family 9 31 473 IPR001701 GO:0004553|GO:0005975
Lal17g0173 482 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 378 404 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0173 Lal-Chr17 1043447 1052566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0173 7 480 Glycoside Hydrolase AT3G43860 69.328 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0173 K01179 - gmx:100811509 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0173 17 1043447 1052566 Lal17g0173 17 1043447 1052566 ECH
Lal17g0173 17 1043447 1052566 Lal21g0283 21 1875331 1878277 LSH