Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0257 ATGATGATTCAAAGAACTGTGTGCTTTTCCAGTTTAAGGAAATTGCTTCATCACCCTGCTTGTGTTTCTTCTTCTTCTTCTAAGATTGGAGCTTACAATGGATATGCATCTCAGCCCTCTTCCTCTCTTCCACTCCCCCTCCCATCTTACAATGGGGAAGAATATGCAAATGTGGATTGGGACAGTCTTGGATTTGGACTGATGCCAACTGATTACATGTACATTAATAAATGTTCCGCTGGCCAGAATTTTAGGAATGGACAGCTTAGTCGTTACGGTCACATTGAACTGAGTCCATCAGCTGGAGTCCTGAATTACGGCCAGGGATTATTTGAAGGCACAAAAGCATACAGAAAAGAAAATGGGAAGCTTTTGTTGTTCCGTCCAGAACAAAATGCAATTCGCATGAAGAATGGAGCAGAGAGAATGTGCATGATATCTCCTTCCATTGATCAATTTGTTGATGCTTTGAAAGAAACTGTCTTAGCAAATAAGCGTTGGAATGGAATGATTAATGTAAAAAAAACTAAGCAGGTTCCTCCTCCGGGCAAAGGATCATTGTACCTAAGACCTCTGCTCTTAGGAACTGGTCCAGTGTTGGGTTTGGCTCCTTCACCTGAATACACTTTCCTCATATATGCTTCCCCTGTTCGCAACTATTTCAAAGAGGGTTCTGCACCCATCAACTTGTACGTGGAGGAGGATTACGATCGCGCTTCTCGCCGTGGTACTGGAAGTGTTAAAACCATTTCTAATTATGCACCAGTCTTGATGGCACAAATTAGAGCCAAAAGCAGAGGGTTTTCAGATGTGTTATACCTTGATTCAGCCACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGACAAATACATTTTAACACCTGCTACCAATGGAACCATTCTTGCTGGAATTACCAGAAAAAGTGTCATTGAAATTGCTCGTGATCACGACTATCAGAAATTGATTCAGGTAGAAGAGCGTGGAGTAACGGTGGATGAGTTGATTGAGGCTGATGAAGTTTTCTGCACAGGTACTGCTGTTGGTGTTGCTCCAGTAGGGAGTGTCACATACAGGGATAAAAGGGTGGAATACATTTCAGGCTCTGGAACCATTTGTCAAGAACTGAACTCAACCCTTTTAGGAATTCAAACGGGTATTATTGAAGATAAGAATGGATGGGTCACTGAAATTAACTGA 1218 0.4187 MMIQRTVCFSSLRKLLHHPACVSSSSSKIGAYNGYASQPSSSLPLPLPSYNGEEYANVDWDSLGFGLMPTDYMYINKCSAGQNFRNGQLSRYGHIELSPSAGVLNYGQGLFEGTKAYRKENGKLLLFRPEQNAIRMKNGAERMCMISPSIDQFVDALKETVLANKRWNGMINVKKTKQVPPPGKGSLYLRPLLLGTGPVLGLAPSPEYTFLIYASPVRNYFKEGSAPINLYVEEDYDRASRRGTGSVKTISNYAPVLMAQIRAKSRGFSDVLYLDSATKKNLEEVSSCNIFIAKDKYILTPATNGTILAGITRKSVIEIARDHDYQKLIQVEERGVTVDELIEADEVFCTGTAVGVAPVGSVTYRDKRVEYISGSGTICQELNSTLLGIQTGIIEDKNGWVTEIN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0257 405 Pfam Amino-transferase class IV 109 362 IPR001544 GO:0003824
Lal21g0257 405 Gene3D - 46 230 IPR043131 -
Lal21g0257 405 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 86 404 IPR005786 GO:0004084|GO:0009081
Lal21g0257 405 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 3 405 - -
Lal21g0257 405 CDD BCAT_beta_family 96 392 IPR033939 GO:0004084|GO:0009081
Lal21g0257 405 ProSitePatterns Aminotransferases class-IV signature. 284 313 IPR018300 GO:0003824
Lal21g0257 405 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 51 401 IPR036038 GO:0003824
Lal21g0257 405 Gene3D - 231 405 IPR043132 -
Lal21g0257 405 PANTHER AMINO ACID AMINOTRANSFERASE 3 405 IPR005786 GO:0004084|GO:0009081
Lal21g0257 405 PIRSF BCAT1 47 405 IPR005786 GO:0004084|GO:0009081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0257 Lal-Chr21 1704055 1713491 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0257 K00826 - gmx:100782644 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0257 21 1704055 1713491 Lal21g0257 21 1704055 1713491 ECH
Lal21g0257 21 1704055 1713491 Lal4g0159 4 992009 1000513 LSH