Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g0096 ATGGTTGCTGAGGCATCATTCAAAACCATAGGTGCAGGAACTCTGTGTTTGAAGCCAATTTTCAATGCTCCTGGTGTTAAAGGCAAACTAGTCACTGCACTATCTGAAAATGAAGGTAGCGTCTATGATTTCATTCTTTCACTCATTCATCAAAAACCAGAAATTGATTCTCCATTCGTGGTTTTAGATCTTGGTGTCGTTGTGAGCCTCATGGAAAATTGGGCTATTAACCTTCCAACGGTTCAACCATTTTACGCAGTTAAGTGTAACCCTAATCCGTCGTTGTTAGGCACATTGGCTGCACTCGGTTCAAGTTTCGATTGCGCCAGTAAAGCCGAAATTGAATCGGTTTTATCACTCGGTGTCACACCAGACCGAATCGTTTATGCGAACCCTTGCAAATCAGAGTCTCACATTAAATACGCTGCTACTGTTGGTGTCAACGTTACAACATTTGATTCTAAGGAAGAGATTCAGAAGATAAGAAAATGGCACCCGAAGTGTGACTTACTTATTCGTATCAAACCACCACAGGATAGTGGAGCGCGTGTTCCGTTGGGTCTCAAATACGGTGCGCTTGAAGAAGAAATTCCAGATCTACTAGAAGCTGCTCACGAGTTAGGGTTGAATGTTATTGGTGTTTCTTTTCATATTGGGAGTGGAGGTGGTGATTCACGCGCCTATCATGAAGCTATTGCAGCTGCTAAAACCGTTTTCGATGTGGCTTCTAGGTTAGGCATGGCGAGAATGAAAATGGTGGATATTGGTGGCGGTTTCTCTAGTGGGACCCAGTTTGATGATGCTGCGTTTCACGTGAACGAGGGTCTTCGGGAATATTTCGGAAATGAAGAGGGTATTATGGTAATTGGAGAACCAGGTAGATACTTTGCTGAATCAGCTTTTACATTAGCGAGCAAAGTTATTGGGAAGCGCGTGAGAGGTGAAGTTAGGGAGTATTGGATCGACGATGGGATATATGGTTCTATGAATTGCATATTATATGACTCACAAACTGTCACGTGCAGACCACTCGCGTGTAACTCAAAACCTGAGGATCCAAGATGCAGAGAAGTGAAAAAGTACCCTTCAACTGTGTTTGGGCCCACTTGTGATTCGTTAGATACTGTTCTAAGAGATTACCTGCTACCGGAACTGCAAATTAATGATTGGCTTGTGTTCCCGAATATGGGTGCTTATACGACGGCGTCTGGGAGCAACTTCAATGGGTTTAGCACATCAGATATATCTACCTACCTTGCATATTCAACTCCTATTACAGGAGAGCTGCAAACTATGTTCTAG 1302 0.4332 MVAEASFKTIGAGTLCLKPIFNAPGVKGKLVTALSENEGSVYDFILSLIHQKPEIDSPFVVLDLGVVVSLMENWAINLPTVQPFYAVKCNPNPSLLGTLAALGSSFDCASKAEIESVLSLGVTPDRIVYANPCKSESHIKYAATVGVNVTTFDSKEEIQKIRKWHPKCDLLIRIKPPQDSGARVPLGLKYGALEEEIPDLLEAAHELGLNVIGVSFHIGSGGGDSRAYHEAIAAAKTVFDVASRLGMARMKMVDIGGGFSSGTQFDDAAFHVNEGLREYFGNEEGIMVIGEPGRYFAESAFTLASKVIGKRVRGEVREYWIDDGIYGSMNCILYDSQTVTCRPLACNSKPEDPRCREVKKYPSTVFGPTCDSLDTVLRDYLLPELQINDWLVFPNMGAYTTASGSNFNGFSTSDISTYLAYSTPITGELQTMF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g0096 433 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 85 103 IPR022653 -
Lal21g0096 433 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 243 260 IPR022657 -
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 57 81 IPR002433 GO:0006596
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 83 110 IPR002433 GO:0006596
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 127 151 IPR002433 GO:0006596
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 157 179 IPR002433 GO:0006596
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 323 336 IPR002433 GO:0006596
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 364 374 IPR002433 GO:0006596
Lal21g0096 433 PRINTS Ornithine decarboxylase signature 384 397 IPR002433 GO:0006596
Lal21g0096 433 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 54 418 IPR009006 GO:0003824
Lal21g0096 433 SUPERFAMILY Alanine racemase C-terminal domain-like 277 414 IPR009006 GO:0003824
Lal21g0096 433 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 298 397 IPR022643 GO:0003824
Lal21g0096 433 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 85 103 IPR000183 GO:0003824
Lal21g0096 433 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 105 117 IPR000183 GO:0003824
Lal21g0096 433 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 208 221 IPR000183 GO:0003824
Lal21g0096 433 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 288 307 IPR000183 GO:0003824
Lal21g0096 433 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 397 410 IPR000183 GO:0003824
Lal21g0096 433 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 34 425 IPR002433 GO:0006596
Lal21g0096 433 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 67 297 IPR022644 GO:0003824
Lal21g0096 433 PANTHER ORNITHINE DECARBOXYLASE-LIKE 34 425 - -
Lal21g0096 433 SUPERFAMILY PLP-binding barrel 56 300 IPR029066 -
Lal21g0096 433 Gene3D Alanine racemase 67 296 IPR029066 -
Lal21g0096 433 CDD PLPDE_III_ODC 56 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g0096 Lal-Chr21 648961 650262 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g0096 K01581 - gmx:547682 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0096 21 648961 650262 Lal21g0096 21 648961 650262 ECH
Lal17g0048 17 290770 292089 Lal21g0096 21 648961 650262 LSH