Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0048 ATGCCTACACTAATACTGACCGAGGGATTATACCAGGCCAAGGGTGCAACAACACCTTTGAGCCTCAAGGCCATTTATAATGCTTCTGGGGTTAAGGGTAAGCGAGTCACTCCATTACTCGCAAATGAAGAAGGTGGCATCTCTCATTTCATTCAATCCATCATTCGAAACACACCAGAAATGGATTCACCATTCTTAGTGCTTGATCTTGGCGTAGTCATGCACCTCATGGACAAATGGACCACCAATCTTCCCTCGGTTCAACCTTATTATGCAGTCAAGTGCAACCCTAACCCATCCTTGTTAGGTGTACTCGCAGCACTCGGCTCCAGCTTCGACTGCGCCAGCCGAGCCGAAATCGAATCTGTTTTATCACTCGGAGTCTCACCGGACCGGATCATTTATGCGAACCCATGCAAATCAGAGAGTCACATTAAATATGCAGCCACTGTTGGTGTCAACGTGACAACATTCGACTCCAAAGAAGAGATCCAAAAGATTAAAAAGTGGCACCCAAAATGTGAGTTACTTATTCGTATTAAGCCACCACAAGACAGTGGAGCAAGAAATGCTTTGGGTCTCAAATATGGTGCGCTTCCTGAAGAAGTTATGCCACTCTTACAAGCCGCTAAAGACGCAGGGTTGAAGGTTGTTGGTGTTTCTTTCCACATTGGAAGTGGTGGTGCTGATTCTAGAACCTACCATGGAGCAATTGCTGCGGCTAAAAGTGTTTTCGACATGGCTTCTATAGAACTAGGCATGCCAAGAATGAAAATAGTGGACATTGGTGGCGGTTTCACGTGTGGGAACCAGTTTGATGCTGCTTCTTTTCACGTGAATGAGGCTCTTGATGACAATTTTGGAAAAGAGGAAGGTGTTGTGATAATTGGAGAACCTGGTCGTTATTTTGCGGAGTCACCTTTTACGTTGGCAAGTAAAGTTATTGGGAAGCGCGTGAGGGGAGAAGTGAGGGAGTATTGGATTGATGATGGGATTTACGGTTCTCTTAATTGCATAATGTATGACTTTGCAACTGTCACTTGCACGCCACTCGCGTGTAGTTCAAAACCAGAGGATCCAGGATGCAGAGACGCAAAAATGTACCCTTCAACTGTGTTTGGACCCACTTGCGATTCGTTAGATACTGTTCTAACAGATTACTTGTTACCGGAATTGGAACTTGACGATTGGCTTGTGTTCCCAAATATGGGTGCTTATACCACATCGTCAGGGACTAATTTCAATGGGTTTAATTCAACAGCTATTTCTACTTACCTAGCATATTCCACCCCAATCGCACGAGGACAATCTCTGTTCTGA 1320 0.4492 MPTLILTEGLYQAKGATTPLSLKAIYNASGVKGKRVTPLLANEEGGISHFIQSIIRNTPEMDSPFLVLDLGVVMHLMDKWTTNLPSVQPYYAVKCNPNPSLLGVLAALGSSFDCASRAEIESVLSLGVSPDRIIYANPCKSESHIKYAATVGVNVTTFDSKEEIQKIKKWHPKCELLIRIKPPQDSGARNALGLKYGALPEEVMPLLQAAKDAGLKVVGVSFHIGSGGADSRTYHGAIAAAKSVFDMASIELGMPRMKIVDIGGGFTCGNQFDAASFHVNEALDDNFGKEEGVVIIGEPGRYFAESPFTLASKVIGKRVRGEVREYWIDDGIYGSLNCIMYDFATVTCTPLACSSKPEDPGCRDAKMYPSTVFGPTCDSLDTVLTDYLLPELELDDWLVFPNMGAYTTSSGTNFNGFNSTAISTYLAYSTPIARGQSLF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0048 439 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 91 109 IPR000183 GO:0003824
Lal17g0048 439 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 111 123 IPR000183 GO:0003824
Lal17g0048 439 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 214 227 IPR000183 GO:0003824
Lal17g0048 439 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 295 314 IPR000183 GO:0003824
Lal17g0048 439 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 404 417 IPR000183 GO:0003824
Lal17g0048 439 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 33 432 IPR002433 GO:0006596
Lal17g0048 439 SUPERFAMILY Alanine racemase C-terminal domain-like 290 421 IPR009006 GO:0003824
Lal17g0048 439 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 306 404 IPR022643 GO:0003824
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 63 87 IPR002433 GO:0006596
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 89 116 IPR002433 GO:0006596
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 133 157 IPR002433 GO:0006596
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 163 185 IPR002433 GO:0006596
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 330 343 IPR002433 GO:0006596
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 371 381 IPR002433 GO:0006596
Lal17g0048 439 PRINTS Ornithine decarboxylase signature 391 404 IPR002433 GO:0006596
Lal17g0048 439 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 73 304 IPR022644 GO:0003824
Lal17g0048 439 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 253 267 IPR022657 -
Lal17g0048 439 Gene3D Alanine racemase 73 303 IPR029066 -
Lal17g0048 439 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 91 109 IPR022653 -
Lal17g0048 439 CDD PLPDE_III_ODC 62 425 - -
Lal17g0048 439 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 62 424 IPR009006 GO:0003824
Lal17g0048 439 PANTHER ORNITHINE DECARBOXYLASE-LIKE 33 432 - -
Lal17g0048 439 SUPERFAMILY PLP-binding barrel 62 305 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0048 Lal-Chr17 290770 292089 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0048 K01581 - gmx:547682 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0048 17 290770 292089 Lal17g0048 17 290770 292089 ECH
Lal17g0048 17 290770 292089 Lal21g0096 21 648961 650262 LSH