Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1223 ATGGTTCTTCAGCAATTAGGTGGAAGCATTTCTCGTGCTCTTCAGCAGATGAGCAATGCTACAATCATTGATGAAAAAGTTCTCAATGAATGCCTCAATGAAATCACACGCGCTCTTCTTCAATCCGACGTTCAATTCAAGCTTGTTCGTGACATGCAAACTAATATCAAGAAGATTGTTAATCTCGATGATCTCGCTGCTGGTCATAACAAACGCAGAATCATACAACAAGCTGTCTTTAATGAACTCTGCAAAATCCTGGATCCTGGGAAGCCCTCTTTCACTCCCAAAAAAGGAAAACCAAGTGTTGTCATGTTTGTTGGTTTACAAGGATCTGGAAAAACCACAACTTGTACAAAATATGCATTTCATCATCAAAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGGGCTGGTGCATTTGATCAGTTGAAGCAAAATGCCACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTAAAAATTGCTGTGGAAGGTGTTGAAAGGTTCAAGAAAGAAAATTGTGATCTTATAATTGTTGACACCAGTGGGCGGCACAAACAGGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCCGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAAGCTGCTTTCGATCAGGCTCAAGCATTTAAACAGAGTGTAGCAGTTGGAGCTGTAATTATCACCAAAATGGATGGTCATGCAAAGGGTGGTGGCGCTCTTAGTGCCGTTGCCGCTACAAAGAGTCCTGTCATATTCATCGGAACCGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTTAGTCGTCTATTAGGCATGGGTGACTTGTCTGGGTTCATGGACAAAATTCAAGAAGTTGTTCCTATGGATCAACAGCCGGAACTGCTTCAAAAGCTTTCGGAAGGAAACTTCACGTTAAGGATTATGTATGAGCAGTTTCAAAACATACTTAAAATGGGTCCTATTGGCCAGGTCTTTTCTATGCTTCCAGGATTTAGTTCTGAGTTAATGCCGAAAGGCCAATTGGATAGTTCAAACCCAAAGATCATGAACGAGTCACGTATGATGCGAATCGCTCGAGGTTCGGGTCGTCAAATCCGGGATGTAATGGATATGATGGAAGAATACAAACGTCTTGCGAAGATATGGAGCAAGATGAAAGGACTTAAGATACCAAAGAAGGGAGATATGAGTGCCTTATCTAGGAATATGAATGCTCAACACATGAGCAAAGTCCTTCCTCCACAAATGTTAAAGCAAATTGGAGGCATGGGTGGATTACAAAGCTTGATGAAGCAAATGGGTTCTACTAAAGACATGATGGGAATGTTTGGTGGTGCTGATAAATAG 1422 0.4114 MVLQQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKPSVVMFVGLQGSGKTTTCTKYAFHHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPIGQVFSMLPGFSSELMPKGQLDSSNPKIMNESRMMRIARGSGRQIRDVMDMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSTKDMMGMFGGADK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1223 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Lal20g1223 473 SUPERFAMILY Signal peptide-binding domain 298 411 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal20g1223 473 Pfam Signal peptide binding domain 369 405 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lal20g1223 473 Pfam Signal peptide binding domain 327 360 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lal20g1223 473 Gene3D - 310 365 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal20g1223 473 SMART AAA_5 100 277 IPR003593 -
Lal20g1223 473 CDD SRP54_G 102 294 - -
Lal20g1223 473 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Lal20g1223 473 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 365 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal20g1223 473 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 366 471 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal20g1223 473 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Lal20g1223 473 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 455 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal20g1223 473 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 365 - -
Lal20g1223 473 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 366 471 - -
Lal20g1223 473 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 373 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Lal20g1223 473 Gene3D - 5 306 IPR042101 -
Lal20g1223 473 Gene3D - 366 411 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal20g1223 473 Gene3D - 91 285 IPR027417 -
Lal20g1223 473 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Lal20g1223 473 Pfam SRP54-type protein, GTPase domain 101 296 IPR000897 GO:0005525|GO:0006614
Lal20g1223 473 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Lal20g1223 473 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1223 Lal-Chr20 16719951 16723806 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1223 K03106 - han:110910191 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1223 20 16719951 16723806 Lal20g1223 20 16719951 16723806 ECH
Lal20g1223 20 16719951 16723806 Lal18g0213 18 1764341 1769550 LSH