Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0213 ATGGTTCTTCAGCAATTAGGTGGAAGCATTTCGCGTGCTCTTCAGCAGATGAGCAATGCCACAATCATCGATGAAAAGGTTCTTAATGAATGCCTCAACGAGATCACTCGCGCTCTCCTTCAATCTGATGTTCAATTCAAGCTTGTCCGTGATATGCAGACTAATATCAAGAAGATCGTCAATCTCGATGATCTCGCTGCTGGTCACAACAAACGCAGAATCATACAACAAGCTGTTTTTAATGAACTCTGCAAAATCCTGGATCCCGGGAAGCCTTCTTTCACTCCCAAAAAAGGAAAAACAAGTGTTGTCATGTTTGTTGGTTTACAAGGATCTGGAAAAACCACAACTTGTACAAAATATGCATTTCATCATCAGAAGAAAGGCTGGAAGCCGGCTCTAGTATGCGCAGATACATTCAGGGCTGGTGCATTTGATCAGTTGAAGCAAAATGCCACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAGTCAGATCCTGTGAAAATTGCCGAGGAAGGTGTTGAAAGATTCAAGAAAGAAAATTGTGATCTTATAATTGTTGACACCAGTGGGCGTCACAAACAAGAAGCTGCTCTTTTTGAAGAAATGCGCCAAGTTTCCGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCCGCTTTTGATCAGGCTCAAGCATTTAAACAGAGTGTTGCAGTTGGAGCTGTAATTATCACCAAAATGGATGGCCATGCGAAGGGTGGTGGCGCTCTTAGTGCCGTTGCTGCAACAAAGAGTCCTGTCATATTCATCGGAACTGGAGAACATATGGATGAATTTGAAGTTTTTGATGTTAAACCATTTGTCAGTCGTCTATTAGGAATGGGTGACTTGTCTGGGTTCATGGACAAAATTCAAGAAGTTGTTCCTATGGATCAACAGCCTGAACTGCTTCAAAAGCTTTCGGAAGGAACTTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCGGCCAGTCACACTTGATGAACTCAACTGATGCTAATGATTGCTTGGTTCATGTCTTTTCTATGCTTCCAGGATTTAGTTCTGAATTAATGCCAAAAGGCCGTGAGAAGGATGGCCAAGCAAAAATTAAGCAGTTGGATAGTTCGAACCCAAAGCTCATGAATGAGTCACGTATGATGCGAATTGCTCGAGGTTCTGGTCGTCTAGTTAAGGAAGTAATGGAAATGATGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAGATGAAAGGGCTTAAAATACCAAAGAAGGGAGATATGAGTGCCTTATCAAGAAATATGAATGCTCAGCACATGAGCAAAGTCCTCCCTCCACAGATGCTAAAACAAATTGGAGGCATGGGTGGATTACAAAGCTTGATGAAGCAAATGGGATCTACCAAAGACATGATGGGTATGTTTGGTGGTGCTGATAAGTAG 1497 0.4175 MVLQQLGGSISRALQQMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNIKKIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAFHHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAEEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDLSGFMDKIQEVVPMDQQPELLQKLSEGTFTLRIMYEQFQNILKMGPIGQSHLMNSTDANDCLVHVFSMLPGFSSELMPKGREKDGQAKIKQLDSSNPKLMNESRMMRIARGSGRLVKEVMEMMEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQSLMKQMGSTKDMMGMFGGADK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0213 498 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Lal18g0213 498 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Lal18g0213 498 SUPERFAMILY Signal peptide-binding domain 298 436 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal18g0213 498 Gene3D - 91 285 IPR027417 -
Lal18g0213 498 CDD SRP54_G 102 294 - -
Lal18g0213 498 Gene3D - 5 306 IPR042101 -
Lal18g0213 498 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Lal18g0213 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Lal18g0213 498 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 496 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal18g0213 498 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 480 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Lal18g0213 498 Gene3D - 310 455 IPR036891 GO:0006614|GO:0008312|GO:0048500
Lal18g0213 498 Pfam Signal peptide binding domain 327 430 IPR004125 GO:0006614|GO:0008312|GO:0048500
Lal18g0213 498 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 496 - -
Lal18g0213 498 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Lal18g0213 498 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Lal18g0213 498 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Lal18g0213 498 TIGRFAM SRP54_euk: signal recognition particle protein SRP54 2 430 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Lal18g0213 498 SMART AAA_5 100 277 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0213 Lal-Chr18 1764341 1769550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0213 K03106 - nnu:104599194 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0213 18 1764341 1769550 Lal18g0213 18 1764341 1769550 ECH
Lal20g1223 20 16719951 16723806 Lal18g0213 18 1764341 1769550 LSH