Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1217 ATGTTCACATTAAAAATGATGATGTTCTCTTCCTATAGTTCCTTCTTTCTCTGCTTTTTTCTCTTCTTCTCTGTAACTCATGTTTTAGGGGACAAATATTTTATAGGAACATATGGAGTAAACTATGGTAGAATTGCAGATAATCTTCCATCACCTCACAGTGTTGTTACACTATTGAAAGCATCAAAGATTAGGAACATTAGAATATATGATGTTAATCAAGAAGTACTCAGTGCATTTAGAGGTTCTGGAATACAAATTTCAGTGTGTCTTCCCAATGAACTTCTGAAAGAAATGAGTGTCGGCGAAGATCGCGCTATAACATGGATCAAAGAAAACATTCAGCCATACATTCCGGGAACGAAAATTCGCGGAATCGCGATCGGAAACGAAATCTTAGGTGGAGGAGATGTTGAACTTTGGGAAGCATTGTTGCCTGCAGCTAAAAATATTTATAGTGCACTTAATAGGCTTGGTTTAGCCCATGAAATTCAAGTTACAAGTCCCCATTCAGAAGCTGTATTTGCTAATTCATACCCTCCATCAGCATGCACTTTTAGGGATGATATATTACCTTATATGAAGCCTCTATTGCAATTTTTCTCACAAAATGGAACACCTTTTTTCTTTAATGCATACCCTTTTTTGGCCTATAAAAATGACCCTCAACATATTGATATAAACTATGCACTATTAAAAAAAAACCATGGAATTTATGATGCTAAGACTAAGCTACACTATGATAACATGTTTGATGCACAAGTTGATGCAGCTTATGCTGCATTAGAGAAAGTTGGGTATGATAAAATGGAAGTGATTGTTTCAGAAACTGGTTGGGCTTCACATGGTGATGATAATGAAGCTGGTGCATCAGTGAAAAATGCAAAGACTTATAATAAAAATTTGAGGAAAAAGTTACTTAAGAGAAAGGGTACCCCTTATAGGCCAAAGAAAGTTGTGAAGGCTTATGTATTTGCTTTGTTTAATGAAAATTTGAAGCCAGGACCAACTTCTGAGAGAAACTTTGGATTATTCAAACCTGATGGAAGCATTGCTTATGATATTGGCTTTACTGGACTTGTAGATTCATCTGCACCTTCATCTCTTCTTAACTTCAAGGGTATTGGATGTTCATACATAATGGTTTTTACAAGTTGTGCTACTCTTCTTCTTCTTGCAACATTGTGA 1188 0.3569 MFTLKMMMFSSYSSFFLCFFLFFSVTHVLGDKYFIGTYGVNYGRIADNLPSPHSVVTLLKASKIRNIRIYDVNQEVLSAFRGSGIQISVCLPNELLKEMSVGEDRAITWIKENIQPYIPGTKIRGIAIGNEILGGGDVELWEALLPAAKNIYSALNRLGLAHEIQVTSPHSEAVFANSYPPSACTFRDDILPYMKPLLQFFSQNGTPFFFNAYPFLAYKNDPQHIDINYALLKKNHGIYDAKTKLHYDNMFDAQVDAAYAALEKVGYDKMEVIVSETGWASHGDDNEAGASVKNAKTYNKNLRKKLLKRKGTPYRPKKVVKAYVFALFNENLKPGPTSERNFGLFKPDGSIAYDIGFTGLVDSSAPSSLLNFKGIGCSYIMVFTSCATLLLLATL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1217 395 SUPERFAMILY (Trans)glycosidases 38 356 IPR017853 -
Lal20g1217 395 PANTHER GLYCOSYL HYDROLASE SUPERFAMILY PROTEIN 18 388 - -
Lal20g1217 395 Gene3D Glycosidases 37 362 - -
Lal20g1217 395 Pfam Glycosyl hydrolases family 17 39 357 IPR000490 GO:0004553|GO:0005975
Lal20g1217 395 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 388 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1217 Lal-Chr20 16671276 16673983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1217 34 377 Glycoside Hydrolase AT3G15800 73.143 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1217 - - gmx:100789056 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0031 25 228520 239432 Lal20g1217 20 16671276 16673983 PCT
Lal20g1217 20 16671276 16673983 Lal25g0031 25 228520 239432 PCT