Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1143 ATGGGTAGCCCTGAAGGAATTGTATCTTTGTTGAAGCAATACGGTGTTACGAAACCCATATCAACGGCGGGGCCAATGGGTGCTGATTTGCAAAAGACTAAGGAGTTAGAGAAGTTTCTTGTTGATTCAGGTCTTTATGAGACCAATGAAGAAGCTGCAAAGAGAGAAGAGGTTCTTCACCGACTTGAACAGGTAGTAAAATCATGGGTGAAGCAAATTACCTGTCTAAGACGATACACTGATCAGATGGTAGAAGATGCAAATGCTGTTATAATGACTTTTGGTTCTTATCGGCTTGGCGTTCATGGTCCTGGTGCTGACTTAGACACTTTATGTATTGGGCCATCGTATGTGAACCGAGAGGAGGATTTTTTCTTCACATTGCACGATATTCTAGCTAACATGGACGAAGTTACAGAACTGCAACCAGTTCCAGATGCTCATGTACCTGTTATGAAATTTAAGTTCAATGGAATATCAATTGACCTTCTGTATGCAAGTATCTCTTGCTTAGTTGTACCTGAAGACTTGGATATATCTGATATCTCTGTTCTACACAATGTTGATGAGCCTACTGTCCGAAGTCTGAATGGATGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGCACTTTCGAACAGCACTTCGTTGCTTGAAGTTTTGGGCCAAGAAGCGAGGCATTTATTCCAATGTAACGGGATTTCTTGGTGGTGTTAATTTGGCACTTCTTGTAGCCCGAGTTTGCCAATTGTATCCTAATGCAAATCCTAGCATGCTTGTCTCTCGATTCTTTAGGGTGTATACACAGTGGCGCTGGCCAAATCCAGTCATGTTATGTCCCATAGAGGAGAATGAGCTTGGTTTTTCTGTTTGGGATCCTCGTAGAAATCCTCGTGATCGTACTCATCACATGCCAATCATCACTCCAGCCTATCCTTGTATGAATTCTAGTTATAATGTTTCGACAAGCACCCTTCGTGTTATGATGGAGCAGTTCCAATATGGCAACAAGATCTGTGGGGAAATAGAACTGAATAAAGTTCATTGGAGTGCACTGTTTGAGTCATACATTTTCTTTGAAAGCTATAAAAACTATTTGCAAGTTGACATAGTTGCTGCTGACGTTGATGATTTGCGTGCCTGGAAAGGTTGGGTTGAATCACGGCTTCGGCAGCTGACTTTGATGATTGAGCGTGACACTCTTGGGAAGTTGCAGTGCCATCCCTATCCTCGTGAGTATATGGACACTTCAAGGCAGTGTGCACATTCTGCTTTCTTCATGGGCTTACAGAGGAAGCAGGGAGAGATTGTTCAAGAAGGTCAGCAATTTGATATACGTGGAACAGTCGAAGAATTTCGGCACTCTGTTAATATGTACATGTTCTGGAGACCGGGGATGGACATTTATGTCTCTCATGTTCGTAGAAGGCAAATCCCTTCCTACGTGTTTCCTGATGGTTATAAAAGACCTCGACCATCAAGGCCAACACCACAAATGGAAACTTCTCCTAAATCATTTCATGAAGATGAGGTTTCTGGGGCTGAACATCGAGAGAGAAACCATAAGAGGAAGCATGATGGTAGGGTAGGTGTGAATCAGAATGTTGTACTGAAAAAACAAGCATCGAGTCCTCCTACTGATGGCTTGGCAAGAAGCAATCCGTGCCAGGGTTCTGGTGATATGTCTGTTGATTTGTCAAGCAACAAGATAGACGAGTTGGCTAGGATACAGTCTCCTGAACCTGAATGTGCCTCAAATTCTAGTGTGATTACATCTGTTACAAGTGGTGGTGGTTCTCCTGAAGATGTTGGATCTGCATCAGTTTCAGGTTGTGTTGACGATAACGCCAGGGGTGTTGAGGGGATGATTAATGGCAGGTTTGAGGATACCACTTATGGAACAGATTCTGTTATACATGTGGAAAATGTGGTGGCCCCTAAAAATGAAGTATTACAAGAAGCGGCGCTACAGGAACAGTTGGAGCCGAATGCATTACTAGGGATGGTTACCGATTCGAAGGCAGGAATTAACTCAGAAACTTTAGAAAAGCCAGTGATAAGGCATGCTCTATTTGAGAATCTTGAGTGTAACATCGACGGCGGACGCGGTATGCATTCGATGAAGAGGAGAGAAAGCCAGCAGCGCCGGTAA 2163 0.4327 MGSPEGIVSLLKQYGVTKPISTAGPMGADLQKTKELEKFLVDSGLYETNEEAAKREEVLHRLEQVVKSWVKQITCLRRYTDQMVEDANAVIMTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFFTLHDILANMDEVTELQPVPDAHVPVMKFKFNGISIDLLYASISCLVVPEDLDISDISVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRTALRCLKFWAKKRGIYSNVTGFLGGVNLALLVARVCQLYPNANPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICGEIELNKVHWSALFESYIFFESYKNYLQVDIVAADVDDLRAWKGWVESRLRQLTLMIERDTLGKLQCHPYPREYMDTSRQCAHSAFFMGLQRKQGEIVQEGQQFDIRGTVEEFRHSVNMYMFWRPGMDIYVSHVRRRQIPSYVFPDGYKRPRPSRPTPQMETSPKSFHEDEVSGAEHRERNHKRKHDGRVGVNQNVVLKKQASSPPTDGLARSNPCQGSGDMSVDLSSNKIDELARIQSPEPECASNSSVITSVTSGGGSPEDVGSASVSGCVDDNARGVEGMINGRFEDTTYGTDSVIHVENVVAPKNEVLQEAALQEQLEPNALLGMVTDSKAGINSETLEKPVIRHALFENLECNIDGGRGMHSMKRRESQQRR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1143 720 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lal20g1143 720 Gene3D - 15 357 - -
Lal20g1143 720 Pfam Nucleotidyltransferase domain 88 162 IPR002934 GO:0016779
Lal20g1143 720 CDD NT_PAP_TUTase 54 209 - -
Lal20g1143 720 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Lal20g1143 720 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 358 - -
Lal20g1143 720 MobiDBLite consensus disorder prediction 486 567 - -
Lal20g1143 720 MobiDBLite consensus disorder prediction 582 611 - -
Lal20g1143 720 Gene3D Poly(A) polymerase predicted RNA binding domain 362 477 - -
Lal20g1143 720 PANTHER POLY A POLYMERASE 11 570 - -
Lal20g1143 720 Pfam Poly(A) polymerase predicted RNA binding domain 362 421 IPR007010 GO:0003723|GO:0043631
Lal20g1143 720 MobiDBLite consensus disorder prediction 539 567 - -
Lal20g1143 720 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Lal20g1143 720 PANTHER NUCLEAR POLY(A) POLYMERASE 4 11 570 - -
Lal20g1143 720 MobiDBLite consensus disorder prediction 584 606 - -
Lal20g1143 720 MobiDBLite consensus disorder prediction 507 533 - -
Lal20g1143 720 Pfam Poly(A) polymerase central domain 15 358 IPR007012 GO:0004652|GO:0043631
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1143 Lal-Chr20 15830987 15836275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1143 K14376 - gmx:100783237 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1143 20 15830987 15836275 Lal20g1143 20 15830987 15836275 ECH
Lal20g1143 20 15830987 15836275 Lal1g1336 1 15120376 15125140 LSH