Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1336 ATGGGTAGCACTGAAGGATTAGGATCTTCGACGATGCAATTCGGTGTCACGAAACCCATATCAATGGCTGGGCCAATGAGTGCTGATTTGCAAAAGACTATGGAGTTAGAAAAGTTTCTTGCTGATTCAGGAATTTATGAGACCATGGAAGAAGCTGCGAAGAGAGAAGAGGTTCTTCACCGACTCAGACAGGTAGTAAAAGGATGGGTGAAGCAAATTACCCGCCTTAGACGATACACTGATCAGATGGTGGAAGATGCGAATGCTGTCATCATGACTTTCGGTTCTTATCGGCTTGGCGTTCATGGTCCTGGTGCCGACTTAGACACTTTATGTATTGGGCCATCCTATGTGAACCGGGAGGAGGACTTTTTCTTCACATTGCATGACATTCTAGCTAACATTGAGGAAGTTACAGAACTACAACCAGTTCCAGATGCTCATGTACCAGTTATGAAATTTAAGTTTGATGGAATATCAGTTGACCTGCTTTATGCAAGTATCTCTTGCTTAATTGTGCCTGAAGACTTGGATATATCTGATATTTCTGTTCTACACAATGTTGATGAGCCTACTGTTCGAAGCCTGAATGGCTGTAGGGTCGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGGTGACTGGATTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTTTGCCAATTGTATCCAAATGCAAATCCTAGCATGCTTGTCTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAAATCCAGTCATGTTATGTCCCATAGAGGAGAATGAGCTTGGGTTTTCTGTTTGGGATCCTCGTAGGAATCCTCGTGATCGCACCCATCATATGCCAATCATCACTCCTGCCTATCCTTGTATGAATTCTACTTATAGCGTTTCTACAAGCACACTTCGTGTTATGATGGAGCAGTTCCAATACGGCAACAAGATCTGTGGGGAAGTAGAACTGAATAAAGTTCATTGGAGTGCACTGTTTGAGCCATACATTTTCTTCGAAAGCTATAAAAACTATTTGCAAGTTGACTTAGTTGCTGCTGATGTTGATGATTTGCGTGCTTGGAAAGGCTGGGTTGAATCACGGCTTCGGCAGCTGACTTTGATGATTGAGCGTGACACTATTGGAAAGTTGCAGTGCCATCCCTATCCTCATGAGTATATGGATACATCAAGGCATTGTGCACATTCTGCTTTCTTCATGGGCTTGCAGAGGAAGGAAGGGGAGATTGTTCAAGAAGGTCACCAATTTGATATACGTGGAACAGTTGAAGAATTTAAGCACTCTGTTAATATGTACATGTTCTGGAGACCGGGGATGGACATTTATGTCTCTCATGTTCGTAGAAGGCAAATCCCATCCTATGTGTTTCCTGATGGTTATAAGCGATCTCGACCATCAAGACCAACGGCACAAATGGAAACTTCTCCTAAATCATTTCACGAAGATGGGGTTTCTGGGGTTGAAAATCGTGAGAGAAACTACAAGAGGAAACATGATTGCAGGGTTGGTGTGAAGCAGAGTGTTGTACTGAAAAAACATGCAGTGGGTCCTCTTGATAGCTTGGCAAGAAGCAACCCGTGCCCGGGTTCTGGTGATACGTCTTTTAATACTGTATCTGAGTCGTCTGACCGTAATAAGTTGACCAATGCAGAGAGTGTTAATTTGTCAAACAACAAGCAACTGAAGCAAGAGGAGTTGGACAGGACACAGTCTCCTGAACCTGAGTGTGCCTCAAATTCTAGTGAGATTACATCTGTTATAAGTGATGGGGGTTCTCCTGAAGATGCTGGATCAGCATCAGTAGCAGGTTTTGTTGAGGATAACAGCAGGAGTGTGGAGGGGATGATCAATGGCAGGTTTGAGGATACCACATGTGGAACAGACTCAGTTATGCATGCGGAAAATATGGTGGCCCCTGCAAATGAAGTATTACAAGATCCGTTACAGGAACAGTTAGAGCGAAATGCATTACTAGCGATGGTTCCTGATTCCAAGGGAATAATTCATTCAGAAACTTTAGAAAAGCCGGAGATTGGGTCTAGCATCGACAGCTTGACGAGAGTTCAGTAG 2100 0.4362 MGSTEGLGSSTMQFGVTKPISMAGPMSADLQKTMELEKFLADSGIYETMEEAAKREEVLHRLRQVVKGWVKQITRLRRYTDQMVEDANAVIMTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFFTLHDILANIEEVTELQPVPDAHVPVMKFKFDGISVDLLYASISCLIVPEDLDISDISVLHNVDEPTVRSLNGCRVADQILKLVPNVEVTGFLGGVNLALLVARVCQLYPNANPSMLVSRFFRVYTQWRWPNPVMLCPIEENELGFSVWDPRRNPRDRTHHMPIITPAYPCMNSTYSVSTSTLRVMMEQFQYGNKICGEVELNKVHWSALFEPYIFFESYKNYLQVDLVAADVDDLRAWKGWVESRLRQLTLMIERDTIGKLQCHPYPHEYMDTSRHCAHSAFFMGLQRKEGEIVQEGHQFDIRGTVEEFKHSVNMYMFWRPGMDIYVSHVRRRQIPSYVFPDGYKRSRPSRPTAQMETSPKSFHEDGVSGVENRERNYKRKHDCRVGVKQSVVLKKHAVGPLDSLARSNPCPGSGDTSFNTVSESSDRNKLTNAESVNLSNNKQLKQEELDRTQSPEPECASNSSEITSVISDGGSPEDAGSASVAGFVEDNSRSVEGMINGRFEDTTCGTDSVMHAENMVAPANEVLQDPLQEQLERNALLAMVPDSKGIIHSETLEKPEIGSSIDSLTRVQ 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1336 699 CDD NT_PAP_TUTase 54 209 - -
Lal1g1336 699 Gene3D Poly(A) polymerase predicted RNA binding domain 341 456 - -
Lal1g1336 699 SUPERFAMILY PAP/OAS1 substrate-binding domain 214 338 - -
Lal1g1336 699 Pfam Poly(A) polymerase central domain 214 338 IPR007012 GO:0004652|GO:0043631
Lal1g1336 699 Pfam Poly(A) polymerase central domain 15 213 IPR007012 GO:0004652|GO:0043631
Lal1g1336 699 MobiDBLite consensus disorder prediction 528 610 - -
Lal1g1336 699 MobiDBLite consensus disorder prediction 468 508 - -
Lal1g1336 699 Gene3D Beta Polymerase, domain 2 47 169 IPR043519 -
Lal1g1336 699 PANTHER NUCLEAR POLY(A) POLYMERASE 4 4 591 - -
Lal1g1336 699 Pfam Poly(A) polymerase predicted RNA binding domain 341 400 IPR007010 GO:0003723|GO:0043631
Lal1g1336 699 Pfam Nucleotidyltransferase domain 77 160 IPR002934 GO:0016779
Lal1g1336 699 MobiDBLite consensus disorder prediction 582 598 - -
Lal1g1336 699 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 341 467 IPR011068 GO:0003723|GO:0016779|GO:0031123
Lal1g1336 699 PANTHER POLY A POLYMERASE 4 591 - -
Lal1g1336 699 SUPERFAMILY Nucleotidyltransferase 14 208 IPR043519 -
Lal1g1336 699 Gene3D - 179 338 - -
Lal1g1336 699 MobiDBLite consensus disorder prediction 493 508 - -
Lal1g1336 699 MobiDBLite consensus disorder prediction 536 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1336 Lal-Chr1 15120376 15125140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1336 K14376 - gmx:100783237 989.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1336 1 15120376 15125140 Lal1g1336 1 15120376 15125140 ECH
Lal20g1143 20 15830987 15836275 Lal1g1336 1 15120376 15125140 LSH