Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1087 ATGTCTATATGTTCAATTTGGTTATTGACCCTTTTTTCTATCATTCATGCAAATGGTATTCTTCCTACACAAGCTTCCAACCAGGTTTACAAAAGTCTTCAGAGTCTATCCTATGGTTCCTCCACACAACCTTACAGAACTGCTTATCATTTCCAACCTCCAAAGAATTGGATAAATGGACCATTAAGATACAAAGGACTATATCATTTGTTCTATCAATACAATCCTGAAGATCTAGTGTGGAAAACAGATCTTGTATGGGCCCACTCAGTATCAAAGGATCTTGTAAATTGGAACATACTAGATCATGCCCTCTTCCCATCTCAGCCATCCGATATCAATGGTTGTTGGTCAGGGTCAGCCACACTACTTTCCGGGGGCAAACCCGTCTTTTTATACACCGGAGTAGACCTATTCAACCAACAAGTTCAAAACTTAGCCTACCCAAAAAACTTATCTGACCCATTACTTAAGGAATGGGTTAAATCACCCAATAACCCAATAATATTTCCAACTAGTGATAACAAAATCAATTCAAGCTTATTTAGAGACCCTACCACAGCTTGGCTAGGCAAAGATGGGCATTGGAGAATGATAATTGGGAGTGCAAGAATCACTGAAGGATTGGCAATTTTATATAGAAGCAAGGATTTTATTAATTGGGCCAAAGCTAAACACCCTTTATATTCAGCCCAAGGCACTGGAATGTGGGAATGCCCTGATTTCTATCCAGTATTGAAGGATGGTGCAATTGGTGTTGATACAAGTGTGAATGGAAACCATGTTAGGCATGTGCTTAAGGTTAGTTTGGATGATAAAAAACATGATTACTATCTAATTGGGACCTATGATACAATTAAAGATAAATTTGTACCAGATAAAGTATTTGAGGATAAAGAATCATTTTTAAGATATGATTATGGAAAATATTATGCATCAAAAACTTTCTTTGATGATGGAAAGAATAGAAGGGTGCTGTTGGGTTGGGTCAATGAATCCTCAACTATTGCTGATGATATCAAGAAAGGATGGTCTGGTATCCATACAATTCCAAGGGCTATATGGCTCCATAAATCTGGTAAACAATTGGTACAGTGGCCTGTAGTGGAAATTGAAAAGCTACGTTCAAACCCAGTGAAGTGGCCAACGAAAGTGCTCAAAGGAGGTGAACTGCTTCAAGTTAATGGTGTCACAGCAGCACAAGCTGATGTTGAAATTTCATTTGAAGTGCATAAATTTGGAGAAGCTGAAGTATTGGATCATTGGGTTGACCCTCAAATTCTGTGTAGCAGAAAGGGTTCATCAGTTAGAAGTGGATTGGGACCGTTTGGTCTTCTAGTTTTAGCTTCAAAAGGATTGCAAGAGTACACATCAGTGTTCTTCAGAATATTCAAATACCAACATAAAAATTTGGTGCTGTTGTGCAGTGACCAAAGCAGGTCTTCTTTAGATAGTGATATTGATAAAACCACTTATGGAACTTTTGTGGATGTGGACCCTCTTCATGAAATGCTATCATTGAGAAGCTTGATTGATCACTCTATCGTAGAGAGTTTTGGGGGAGAAGGAAAAACTTGTATCACGACCAGAGTTTATCCGACATTGGCAATCAATGATAAGGCACAATTGCATGCTTTCAATAATGGAACTGTTGATGTCATGATCACAAAATTGAGTGCTTGGAGCATGAAGAAAGCACAAATAAATGAAGATTAA 1716 0.3805 MSICSIWLLTLFSIIHANGILPTQASNQVYKSLQSLSYGSSTQPYRTAYHFQPPKNWINGPLRYKGLYHLFYQYNPEDLVWKTDLVWAHSVSKDLVNWNILDHALFPSQPSDINGCWSGSATLLSGGKPVFLYTGVDLFNQQVQNLAYPKNLSDPLLKEWVKSPNNPIIFPTSDNKINSSLFRDPTTAWLGKDGHWRMIIGSARITEGLAILYRSKDFINWAKAKHPLYSAQGTGMWECPDFYPVLKDGAIGVDTSVNGNHVRHVLKVSLDDKKHDYYLIGTYDTIKDKFVPDKVFEDKESFLRYDYGKYYASKTFFDDGKNRRVLLGWVNESSTIADDIKKGWSGIHTIPRAIWLHKSGKQLVQWPVVEIEKLRSNPVKWPTKVLKGGELLQVNGVTAAQADVEISFEVHKFGEAEVLDHWVDPQILCSRKGSSVRSGLGPFGLLVLASKGLQEYTSVFFRIFKYQHKNLVLLCSDQSRSSLDSDIDKTTYGTFVDVDPLHEMLSLRSLIDHSIVESFGGEGKTCITTRVYPTLAINDKAQLHAFNNGTVDVMITKLSAWSMKKAQINED 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1087 571 PANTHER CELL-WALL INVERTASE 2 569 - -
Lal20g1087 571 Pfam Glycosyl hydrolases family 32 C terminal 370 562 IPR013189 -
Lal20g1087 571 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 2 569 - -
Lal20g1087 571 SMART glyco_32 50 523 IPR001362 GO:0004553|GO:0005975
Lal20g1087 571 Pfam Glycosyl hydrolases family 32 N-terminal domain 50 367 IPR013148 -
Lal20g1087 571 Gene3D - 378 563 - -
Lal20g1087 571 SUPERFAMILY Arabinanase/levansucrase/invertase 42 368 IPR023296 -
Lal20g1087 571 Gene3D Glycosyl hydrolase domain; family 43 54 377 IPR023296 -
Lal20g1087 571 CDD GH32_Fruct1-like 56 356 - -
Lal20g1087 571 SUPERFAMILY Concanavalin A-like lectins/glucanases 367 565 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1087 Lal-Chr20 14989977 14994423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1087 64 569 Glycoside Hydrolase AT3G13790 62.646 0.0 652
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1087 K01193 - gmx:100776791 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0284 8 1916999 1921182 Lal20g1087 20 14989977 14994423 PCT
Lal20g1087 20 14989977 14994423 Lal8g0284 8 1916999 1921182 PCT