Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0984 ATGGCGGTTTCTACAATAGCTTTATACGCGAGTCCACCGAGCAGTGTGTGTTCCACACCGCACCCATGCCAGATCAACGCACACGCTTCTTACGACTTTGAATTGGGTTCTCGATCTTTGTCGCCGCCGTCACAATCAGCGGCTTCGACATTGCAGAAGCCCGCCGTGATGGGCGGGCTTTCTTGTCTGTTCTCGTCATCGGCGGTCACGAAGCACGTCCCGTTGTCCTCGAGTTTTTCCGGCCCTGCTGGGGATGAATTGGGGTCTGAATTGAAGGAATTTAGCAGTTCCTTTTCGTATTCGCCGAGCAAATTCATCGGGCCGCCTTCGTGGAAGAAAGATCATCATCATCATAGCCCAGTTTCTGTTTTCCATGGACCTGTTTCGTGTAGCAATAGCACCGTTGGTTCTTCTTCGAGGAGTTGTACTTCTTCCAGCATCCCTGGGACTAGTGGTTTTTTTGATGGGTTTGTGAGGAATGCTTTGGGTTCTTGTTTGGATTATGATTCTCCAAGTTTCAAGGTTGATCATGATGGTGGTGGTGGTGGTGGTGATTTAGATGAGTTGACCTTCAATTTGGAGGATACTTTTGTGGAAGGTGGTTTTGAACCATATGCTAAGAAATTGCTGCTTGGGGCCCAGTTGAGACATAAGATCTTCTATGAAGAGTTTGTAATCAAGGCTTTTTGTGAAGCCGAGAAAGCTCACAGAGGGCAGATGCGTGCTAGTGGGGATCCGTATTTGCAGCACTGTTTGGAAACTGCTGTGCTACTTGCGTTGATCGGTGCTAATTCCACCGTAGTTGCTGCAGGGCTTTTGCATGACACTCTTGATGATTCTTTTCTGACTTATGATTACATATTTGCGACATTTGGTGCTGGGGTTGCTGACTTAGTTGAAGGGACGTTTGTGGTAGCAATACGGTTTTGGCGACACCCAAACCTTGACATATCGCCTTCTGTTTCCAAATTGAGTCACTTAAGCAAGCTTGCTCGAGAAAATAATACAGCTTGCAAGTCGGTTGAGGCAGACCGCCTGCATACCATGTTCCTTGCCATGGCAGATGCAAGAGCTGTACTCATTAAATTGGCAGATCGGTTACATAATATGATGACACTAGATGCATTGCCGGTGCCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAAATTTTTGCTCCTTTGGCCAATCGCTTAGGAATATCTAATTGGAAGGAACAGTTAGAAAATTTGTGTTTTAAGCATCTCAACCCAGACCAGCACGAGGAGCTTTCGTCGAAGCTTGTGGACTCATGTGATGATGCAATGATCACTTTTGCAATAGAGAAATTAGAGCAAGCACTTAAAGATGAAGGCATATCTTATCACGTCCTCTCTGGGCGGCATAAGAGCTTGTATAGTGTTTATTGCAAAATGTTGAAGAAGAAGCTATCCATAGATGATATACATGACATTTACGGGCTGCGCTTGATTGTTGACAAGGAGGAAGACTGTTATAAAGCCTTGACAGTTGTTCACCGGTTATGGCCTGTAGTACCTGGAAAGTTGAAAGATTACATACGTTGCCCCAAGTTCAATGGGTATCAATCTCTGCATACTGTGGTAATTGGTGAAGGCAAGCTTCCCCTTGAAGTGCAAATTCGGACAAAAGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGATTGTCAGCATTCTTCATTTGTGCTTCAAATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAGGCAATGAGTAAAGATTGTTCATCTGATGGACGTGCTTATTCAATCAAGCCACCATGCAAGTTCCCTTCTCATGCCGATGATTGCCCATATTCTTATAAGCCTGATTGTGGCCAGGATGGACCTGTGTTTGTTATCTTGATCGAGAGTGATAAGATGTCTGTCCAAGAATTTCGTGCAAACTCAACGGTGATGGATTTGTTGGAAAGAGCTGGGCGAGCAGGGTCTAGGTTGACGACATATCGGTTCCCACTGAAGGAAGAACTGAGGCCAAGATTGAATCATGTTCGTGTAAGTGATCCCAAATGCAAGTTGAAGATGGGAGATGTGGTGGAAATAACACCAGCTATACCGGACAAGTCCCTGACCGAATATAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACTGTGTCAGCTACCGGACCTGCTGCAAGCAGCATGGTTGGCTCAAGAAGCTGA 2241 0.4565 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSLSPPSQSAASTLQKPAVMGGLSCLFSSSAVTKHVPLSSSFSGPAGDELGSELKEFSSSFSYSPSKFIGPPSWKKDHHHHSPVSVFHGPVSCSNSTVGSSSRSCTSSSIPGTSGFFDGFVRNALGSCLDYDSPSFKVDHDGGGGGGDLDELTFNLEDTFVEGGFEPYAKKLLLGAQLRHKIFYEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDSFLTYDYIFATFGAGVADLVEGTFVVAIRFWRHPNLDISPSVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVPKQQRFAKETLEIFAPLANRLGISNWKEQLENLCFKHLNPDQHEELSSKLVDSCDDAMITFAIEKLEQALKDEGISYHVLSGRHKSLYSVYCKMLKKKLSIDDIHDIYGLRLIVDKEEDCYKALTVVHRLWPVVPGKLKDYIRCPKFNGYQSLHTVVIGEGKLPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSKDCSSDGRAYSIKPPCKFPSHADDCPYSYKPDCGQDGPVFVILIESDKMSVQEFRANSTVMDLLERAGRAGSRLTTYRFPLKEELRPRLNHVRVSDPKCKLKMGDVVEITPAIPDKSLTEYREEIQRMYDRGLTVSATGPAASSMVGSRS 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0984 746 Pfam HD domain 232 401 - -
Lal20g0984 746 SMART hd_13 243 379 IPR003607 -
Lal20g0984 746 SUPERFAMILY Nucleotidyltransferase 407 596 IPR043519 -
Lal20g0984 746 SUPERFAMILY HD-domain/PDEase-like 208 417 - -
Lal20g0984 746 Gene3D Hypothetical protein af1432 213 417 - -
Lal20g0984 746 ProSiteProfiles HD domain profile. 247 370 IPR006674 -
Lal20g0984 746 Pfam Region found in RelA / SpoT proteins 460 569 IPR007685 GO:0015969
Lal20g0984 746 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 746 - -
Lal20g0984 746 ProSiteProfiles S4 RNA-binding domain profile. 684 720 - -
Lal20g0984 746 Gene3D Beta Polymerase, domain 2 422 550 IPR043519 -
Lal20g0984 746 PANTHER - 1 746 - -
Lal20g0984 746 CDD NT_Rel-Spo_like 439 558 IPR007685 GO:0015969
Lal20g0984 746 CDD HDc 245 392 IPR003607 -
Lal20g0984 746 SMART RelA_SpoT_2 460 570 IPR007685 GO:0015969
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0984 Lal-Chr20 12914387 12919552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0984 242 567 EF-hand Containing Proteins AT3G17470 29.395 4.21e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0984 K00951 - gmx:100787301 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0984 20 12914387 12919552 Lal20g0984 20 12914387 12919552 ECH
Lal20g0984 20 12914387 12919552 Lal18g0114 18 915913 922006 LSH