Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0969 ATGGCCCTTTGTAACGAAATTATTGGTTCTTCATTGATTGAAAGTTCCTCCACAAGAATCCATTTACAACAAAAGCAAAACTTGTTCTTGGGCAGGCCTGGGTTTGTTCCATTGAGAAACAGAAGAGTTGTTAGGTTAAGGAAGGTTGCTAAGTTTCCAGTTGCAGCTCTCAGTACAGATTTGGTGAAGAGTTCTTCTTCTTCTTCATTATCAGCTTCTGTATCTGTAGAGAAACCAGTGAAATTCAAGGTTAGAGCTGTGGTGACAGTGAGGAACAAGATCAATGAGGATTTAGCAGAGTTACTTGTGAAGCAATTGGATGCTATTGCTGACAGTTTTGGAAACAATATTGGGCTTGAGCTTCTTAGCACAGATATTGATCAAAAAACAAGGGCTCCAAAAAAGACAAATGAAGCAGTGCTAAAGGATTGGTCAACGAAATCCAATGTAAAAGCTGAAAGAGTTGAATACACAGCTGAATTCAACGTAGATTCAAATTTTGGAGTACCAGGAGCCATCACTGTTACAAATAGACACCAACAAGAATTTTTCTTGGAAACTATAACCATTGAAGGATTTCCAAGTGGAGTAGTTCATTTCCCATGCAACTCATGGGTACAAGCAAGGAAAGATCACCCTGGAAAGAGGATTTTCTTTTCTAATAAGTCTTATTTACCTGGCGATACCCCTTCCGGGCTCAAATATTTTAGGGAGAAGGAGTTGAGAAATCTCAGAGGAGATGGAAAAGGGTTTAGAAACTTATCTGACAGGATTTATGACTATGACACATACAATGATCTTGGAAATCCAGATGTTGGTAATGACTTTGAAAGACCAACTGTTGGAGGATCAGAAAAATATCCTTACCCACGACGGTGTCGTACTGGCCGGGGCCCTATGGAATCAGATAATACTGTTGAGAGTAGAGTGGAGAAACCACTACCTATGTACGTGCCAAGAGATGAACGATTTGAGGAATGTAAGCAATACACATTCGCTACTAAGAGGCTCAAAGGAGTGCTACATATCTTGATTCCTAGCCTTATGTCTAGCCTTTCAGCCGAAAACGAAGACTTCAATGAACTAGCTGATGTTGAAAGCCTTTATACTGAAGGGCTTTTGATTAAGTTGGGATTCCAAGATGATATTTTGAAGAATCTTCCATTGCCTAAAATGTTCAGCCAGGCCCAGAAATCTAGTCAGGGAATTCTCAAGTTTGACATGCCCAAGATCCTTACTAAGGACAAATTTGCTTGGCTGAGAGATGACGAATTTGGCCGTGAAGCAATTGCAGGAGTTAACCCTATTAGCATTGAGAGGCTTAAAGTTTTCCCACCTGTTAGCAACTTAGACCCTGAAATATATGGTCCATTAGATTCTGCTCTTAAAGAAGAGCACATTTTAAGTCAACTTAATGGCATGACCGTCCAACAGGCACTAGATGAAAACAAGCTGTTTATGATAGATTATCATGATATATACCTTCCATTTGTTGAAAGAATTAATGCCCTTGATGGTAGAAAATCATATGCTACTCGTGCTATTTTTTTCTTGACACCAAATGGTACTCTCAAACCTGTGGCTATAGAACTTAGCTTGCCACCTGCTGGACCAAGTTACCAATCAAAACGTGTAGTTACACCTCCTCAAGATGCAACTAGCAATTGGATATGGATGCTTGCTAAGGCTCATTTTCTCTCCAATGATGCTGGGGCTCACCAACTTGCACACCATTGGTTACGCACACATGCTTGCATGGAACCTTTCATATTGGCAGCACATAGGCAATTAAGTGCTATGCATCCAATTTATAAGTTACTGGATCCACACATGAGATACACGTTGGAGATCAATGCTTTAGCTCGACAGAGCTTGCTCAGTGTAGATGGAGTCGTTGAGTCTTGCTTCACAGTTGGCCGCTACCTCATGGAGCTTAGTTCCAATGTTTACAAAACTGCTTGGCGCTTTGACATGGATGCTCTTCCTGCAGATCTTGTTCGCAGGGGAATGGCAGTACCTGATCCAATACAACCACATGGTTTAAAGCTACTAATAGAAGATTACCCTTATGCTAATGATGGACTACTAATATGGTCTGCAATTGAAAATTGGGTTCGTAAATATGTGAATCATTACTACACAGATTCAAGCATGGTAAGCGATGATAAAGAGTTACAAGGTTGGTACTCTGAGACAATCAATGTAGGCCATGCTGATCTTAAAGATGCAAGTTGGTGGCCAAAATTAAACACTAATGAAGACCTTATATATATTCTTACTACATTCATTTGGAATGTTTCTGCACTACATGCTGCACTTAATTTTGGACAGTATCCTTATGGTGGATTCGTGCCGAATCGTCCACCGATGATGAGAAGATTGATTCCAGAAGAGAGTGACCCAGAATTTGGTAACTTAATAGCAGATCCACAGAAGTTTTTCCTTCATTCATTACCTAGTGTGTTGCAAGCTTCAAAATATATGGCTGTGGTTGATACATTGTCTACTCATTCACCTGATGAGGAATACTTGGGTGAGAGGCAACAACCATCCATTTGGTCAGATAATCCTGAGATCATTGAAGCATTCTATGAGTTCTCGGCCGAGATCGGGAGGATTGAGAAGGTAATCGACAGCCGAAACCGCGATTCGAATTTAAAGAATCGTTGTGGTGCTGGGGTGTTGCCTTATGAATTACTTGCTCCAAGTTCTGGTAGTGGTGTTACTTGCAGAGGTGTTCCAAATAGTGTATCCACATAA 2760 0.4058 MALCNEIIGSSLIESSSTRIHLQQKQNLFLGRPGFVPLRNRRVVRLRKVAKFPVAALSTDLVKSSSSSSLSASVSVEKPVKFKVRAVVTVRNKINEDLAELLVKQLDAIADSFGNNIGLELLSTDIDQKTRAPKKTNEAVLKDWSTKSNVKAERVEYTAEFNVDSNFGVPGAITVTNRHQQEFFLETITIEGFPSGVVHFPCNSWVQARKDHPGKRIFFSNKSYLPGDTPSGLKYFREKELRNLRGDGKGFRNLSDRIYDYDTYNDLGNPDVGNDFERPTVGGSEKYPYPRRCRTGRGPMESDNTVESRVEKPLPMYVPRDERFEECKQYTFATKRLKGVLHILIPSLMSSLSAENEDFNELADVESLYTEGLLIKLGFQDDILKNLPLPKMFSQAQKSSQGILKFDMPKILTKDKFAWLRDDEFGREAIAGVNPISIERLKVFPPVSNLDPEIYGPLDSALKEEHILSQLNGMTVQQALDENKLFMIDYHDIYLPFVERINALDGRKSYATRAIFFLTPNGTLKPVAIELSLPPAGPSYQSKRVVTPPQDATSNWIWMLAKAHFLSNDAGAHQLAHHWLRTHACMEPFILAAHRQLSAMHPIYKLLDPHMRYTLEINALARQSLLSVDGVVESCFTVGRYLMELSSNVYKTAWRFDMDALPADLVRRGMAVPDPIQPHGLKLLIEDYPYANDGLLIWSAIENWVRKYVNHYYTDSSMVSDDKELQGWYSETINVGHADLKDASWWPKLNTNEDLIYILTTFIWNVSALHAALNFGQYPYGGFVPNRPPMMRRLIPEESDPEFGNLIADPQKFFLHSLPSVLQASKYMAVVDTLSTHSPDEEYLGERQQPSIWSDNPEIIEAFYEFSAEIGRIEKVIDSRNRDSNLKNRCGAGVLPYELLAPSSGSGVTCRGVPNSVST 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0969 919 CDD PLAT_LH2 82 221 IPR042057 -
Lal20g0969 919 ProSitePatterns Lipoxygenases iron-binding region signature 1. 573 587 IPR020833 GO:0016702|GO:0046872
Lal20g0969 919 ProSitePatterns Lipoxygenases iron-binding region signature 2. 600 610 IPR020834 GO:0016702|GO:0046872
Lal20g0969 919 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 38 918 - -
Lal20g0969 919 Gene3D PLAT/LH2 domain 68 224 - -
Lal20g0969 919 PANTHER LIPOXYGENASE 38 918 IPR000907 GO:0016702|GO:0046872
Lal20g0969 919 SUPERFAMILY Lipoxigenase 225 918 IPR036226 -
Lal20g0969 919 SMART LH2_4 82 221 IPR001024 GO:0005515
Lal20g0969 919 Gene3D - 552 918 - -
Lal20g0969 919 Pfam PLAT/LH2 domain 155 219 IPR001024 GO:0005515
Lal20g0969 919 PRINTS Plant lipoxygenase signature 190 208 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 216 237 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 255 271 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 288 307 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 356 377 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 404 420 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 443 462 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 510 534 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Plant lipoxygenase signature 831 845 IPR001246 GO:0016491
Lal20g0969 919 PRINTS Lipoxygenase signature 555 572 IPR013819 GO:0016702|GO:0046872
Lal20g0969 919 PRINTS Lipoxygenase signature 573 590 IPR013819 GO:0016702|GO:0046872
Lal20g0969 919 PRINTS Lipoxygenase signature 593 613 IPR013819 GO:0016702|GO:0046872
Lal20g0969 919 Gene3D - 328 416 IPR027433 -
Lal20g0969 919 ProSiteProfiles PLAT domain profile. 97 220 IPR001024 GO:0005515
Lal20g0969 919 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 223 919 IPR013819 GO:0016702|GO:0046872
Lal20g0969 919 Gene3D - 417 550 - -
Lal20g0969 919 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 82 224 IPR036392 GO:0005515
Lal20g0969 919 Pfam Lipoxygenase 232 902 IPR013819 GO:0016702|GO:0046872
Lal20g0969 919 Gene3D - 225 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0969 Lal-Chr20 12553873 12566376 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0969 1 918 Acyl Lipid Metabolism Gene Families AT1G72520 68.167 0.0 1308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0969 K00454 - gmx:100791000 1395.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0969 20 12553873 12566376 Lal20g0969 20 12553873 12566376 ECH
Lal20g0969 20 12553873 12566376 Lal18g0323 18 2718038 2724101 LSH