Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0323 ATGTCCCTTACAAAAGAAATCATGGGTTCTTCACTGAAAATACAAGGATTTCTTCCAAACAATAATAGCTTTTTTCAACACAAGCATCAAGGTCATTTTCTTGGGAACCCTGTCCCTATATTTTTGAGTCCTATGCAAAAAAGAAGAGATTTAAGGTTGAGAAAAAGTGTGAAGTTTCCTGTGGCAGCTATAAGTGAGGATTTGATTAAAGCCTATGTGAAACAACATGCAGAGAAACCAGTTCAGTTTAAGGTTAGAGCTGTAATCACAGTTAAGAATAGGAGCAAACAAGATATTAAAGACACCATTGTTAAGCATTTTGATTCCATCACCGATAAGATTGGAAGAAATGTTGTGTTGCAACTTATCAGCACTGAAATTGATCCAAAAACAAAAGCTCCAAAGAAGAGCAATGAATCAATAGTGAAGGATTGGTCTAAGAAATCAAAAGTTAAAGCAGAAAGAACACATTACATAGCTGAATTCATAGTGGACTCAAATTTTGGAATACCAGGAGCAATTACTGTGACAAATAAACACCAAAGAGAGTTTTTTATAGAAAGTATAGCCATTGAAGGGTTTGCAAGTGGAGTAGTACATTTCCCTTGCAATTCATGGCTACAACCTACAACAAAGGATCATCATGGAAATAGGATATTCTTTTCTAACAAGCCATATTTACCTGGAGAAACACCTGCTGGGCTTAAATTATTAAGGGAAAAAGAGCTGAAAAATCTTAGAGGAGATGGAGAAGGAGTTAGATTATTATCTGATAGAATATATGATTTTGATACATACAATGATCTTGGAAATCCAGATAAAGGAGTTGACTTTGTTAGACCAACTTTGGGTGAATCCCAAAATTATCCATATCCAAAACGATGTCGTACTGGTCGAGCCTCAACTGATACAGATATACATGCAGAGAGTGTTGTGGACAATCCAAGGCTTATGTATGTACCAAGAGATGAACAATTTGATGAATCTAAGATGAAAACATTTTTTGCCAAGAGGGTTGATGCAGTGCTCCATACCATGATGCCTAGCATTAAGGCTACTCTTTCTGCTAATAACCAAGACTTCAATGATTTCTCAGATGTTGATGAACTCTATAATGAAAAGTATCTCAATAAGTTGGGCTTGAATGATGGAATTTTGAAGAAATTGCCACAAGTTGTTACCAAGATACAAGAATACAGCAAGGGAATTCTTAAGTTTGACACTCCCAAGATTATTGCCAAGGATAAATATGCATGGCTGAGAGATGAAGAATTTGCAAGGCAAGTAATAGCAGGAGTAAACCCTGTTAACATTGAGAAACTTCAAGTTTTCCCACCTTTGAGCAAGCTTGACCCTGAAATTTATGGCCCTCAAGAATCTGCTCTTAAAGAAGAGCACATTTTAGGCCAACTTAATGGCATGACTGTGCAACAGGCAATAGAGGAAAATAAGTTGTTTATGATAGATTATCATGACATATACCTTCCATTTGTTGATAAGATCAATGCCCTAGATGATAGAAAATCATATGCTACACGCACCATTTTTTTCTTGACACCCTTAGGCACTCTCAAACCTATTGCTATAGAACTTAGCCTTGCTCATGATGGACCAAGTTCAAGATCAAAACAAGTAGTTACTCCTCCTATGGATGCAACTACTACTTGGATATGGCAACTTGCTAAAGCTCATGTTTGTGCCAATGATGCTGGAGTGCACCAACTTGTTAATCATTGGTTGAGGACTCATGCATGCATGGAACCATTCATATTGTCAGCTCATAGACAATTAAGTTCGATGCATCCAATTTTCAAGTTGTTGGATCCACACATGAGGTACAACTTGGATATCAATGCCATAGCTCGCCAGAGACTCATCAATGCTGGTGGAATCATTGAGTCAAGCTTCACTCCTGGCCGCTATTGCATGGAGATTAGTTCTGCTGCTTACAAAAACTTTTGGCGCTTTGACAAGGAAGGCCTCCCTGCTGATCTCATACGCAGGGGAATAGCTATACCTGACTCAACACAACCACATGGTTTAAAGCTTCTAATAGAAGACTACCCATATGCAAAAGATGGACTTTTGATCTGGTCAGCAATTGAGAATTGGGTCCGCACCTATGTGAACCACTACTACCATCATCCAAGCATGATTTGCAATGATAAAGAGTTACAAAAATGGTACTTTGAGTCGATCAATGTGGGTCACGCAGATCTCAGACACGAAACCTGGTGGCCCACATTGAACAATGGTGAGGATCTTGTCAATATCCTCACCACATTGATTTGGATATCATCAGCACAACATGCAGCTCTCAACTTTGGACAGTACCCTTATGGAGGTTATGTACCAAATCGTCCCCCATTAATGAGAAGGCTAATCCCACAAGAGGGTGATCCAGAATATGCAAATTTCCTAGATGACCCACAAAAGTATTTCCTAAATGCATTGCCTAGTCTGCTACAAGCTACAAAATATATGGCTGTGGTTGACACATTATCTACTCACTCACCAGATGAGGAGTACTTGGGAGAAAGGAATCAGCCATCTATTTGGTCAGGTGATGCACAAATCATTGATGCATTCTATCAATTCTCAGCAGAGATAGGAAGAATAGAGAAAGAGATTGAGAAAAGAAACCATGATGCAACACTAAGGAACCGATGTGGCGCAGGAGTTATACCTTATGAGTTACTTGCACCTAGCTCCGGACCTGGTGTTACATGTAGAGGAGTTCCTAATAGTGTCTCCACATAA 2760 0.3888 MSLTKEIMGSSLKIQGFLPNNNSFFQHKHQGHFLGNPVPIFLSPMQKRRDLRLRKSVKFPVAAISEDLIKAYVKQHAEKPVQFKVRAVITVKNRSKQDIKDTIVKHFDSITDKIGRNVVLQLISTEIDPKTKAPKKSNESIVKDWSKKSKVKAERTHYIAEFIVDSNFGIPGAITVTNKHQREFFIESIAIEGFASGVVHFPCNSWLQPTTKDHHGNRIFFSNKPYLPGETPAGLKLLREKELKNLRGDGEGVRLLSDRIYDFDTYNDLGNPDKGVDFVRPTLGESQNYPYPKRCRTGRASTDTDIHAESVVDNPRLMYVPRDEQFDESKMKTFFAKRVDAVLHTMMPSIKATLSANNQDFNDFSDVDELYNEKYLNKLGLNDGILKKLPQVVTKIQEYSKGILKFDTPKIIAKDKYAWLRDEEFARQVIAGVNPVNIEKLQVFPPLSKLDPEIYGPQESALKEEHILGQLNGMTVQQAIEENKLFMIDYHDIYLPFVDKINALDDRKSYATRTIFFLTPLGTLKPIAIELSLAHDGPSSRSKQVVTPPMDATTTWIWQLAKAHVCANDAGVHQLVNHWLRTHACMEPFILSAHRQLSSMHPIFKLLDPHMRYNLDINAIARQRLINAGGIIESSFTPGRYCMEISSAAYKNFWRFDKEGLPADLIRRGIAIPDSTQPHGLKLLIEDYPYAKDGLLIWSAIENWVRTYVNHYYHHPSMICNDKELQKWYFESINVGHADLRHETWWPTLNNGEDLVNILTTLIWISSAQHAALNFGQYPYGGYVPNRPPLMRRLIPQEGDPEYANFLDDPQKYFLNALPSLLQATKYMAVVDTLSTHSPDEEYLGERNQPSIWSGDAQIIDAFYQFSAEIGRIEKEIEKRNHDATLRNRCGAGVIPYELLAPSSGPGVTCRGVPNSVST 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0323 919 Gene3D - 418 550 - -
Lal18g0323 919 SMART LH2_4 83 223 IPR001024 GO:0005515
Lal18g0323 919 ProSitePatterns Lipoxygenases iron-binding region signature 1. 573 587 IPR020833 GO:0016702|GO:0046872
Lal18g0323 919 ProSitePatterns Lipoxygenases iron-binding region signature 2. 600 610 IPR020834 GO:0016702|GO:0046872
Lal18g0323 919 SUPERFAMILY Lipoxigenase 227 918 IPR036226 -
Lal18g0323 919 CDD PLAT_LH2 83 223 IPR042057 -
Lal18g0323 919 Pfam PLAT/LH2 domain 155 221 IPR001024 GO:0005515
Lal18g0323 919 PRINTS Plant lipoxygenase signature 191 209 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 218 239 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 257 273 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 290 309 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 358 379 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 404 420 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 443 462 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 510 534 IPR001246 GO:0016491
Lal18g0323 919 PRINTS Plant lipoxygenase signature 831 845 IPR001246 GO:0016491
Lal18g0323 919 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 225 919 IPR013819 GO:0016702|GO:0046872
Lal18g0323 919 PANTHER LIPOXYGENASE 44 918 IPR000907 GO:0016702|GO:0046872
Lal18g0323 919 Gene3D PLAT/LH2 domain 68 226 - -
Lal18g0323 919 Gene3D - 227 329 - -
Lal18g0323 919 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 83 226 IPR036392 GO:0005515
Lal18g0323 919 Gene3D - 330 417 IPR027433 -
Lal18g0323 919 Gene3D - 552 918 - -
Lal18g0323 919 ProSiteProfiles PLAT domain profile. 99 221 IPR001024 GO:0005515
Lal18g0323 919 PANTHER LIPOXYGENASE 3, CHLOROPLASTIC 44 918 - -
Lal18g0323 919 Pfam Lipoxygenase 234 902 IPR013819 GO:0016702|GO:0046872
Lal18g0323 919 PRINTS Lipoxygenase signature 555 572 IPR013819 GO:0016702|GO:0046872
Lal18g0323 919 PRINTS Lipoxygenase signature 573 590 IPR013819 GO:0016702|GO:0046872
Lal18g0323 919 PRINTS Lipoxygenase signature 593 613 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0323 Lal-Chr18 2718038 2724101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0323 1 918 Acyl Lipid Metabolism Gene Families AT1G17420 67.310 0.0 1313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0323 K00454 - gmx:100793614 1421.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0323 18 2718038 2724101 Lal18g0323 18 2718038 2724101 ECH
Lal20g0969 20 12553873 12566376 Lal18g0323 18 2718038 2724101 LSH