Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0399 ATGATAATGTCTATGTTTGCTGCATATTCTATCTATACAGTTGCTAAGGATGCAGCTGGAGTTGCAGGGAACATCTTTGCTTTTGGGTTGTTTGTATCTCCCATACCCACATTTAGAAGAATTATGAGAAATGGGTCAACAGAATTGTTCTCAGGGTTGCCATATGTTTATTCTCTCATCAATTGCTTGATTTGTATGTGGTATGGAACACCTCTGATATCACCTGATAATTTGTTGGTTACAACTGTTAATTCAATTGGAGCAGTTTTTCAGTTTGTGTACATAGTCATCTTCATGATCTATGCTGAGAAAGAAAAAAAGGTGAGAATGTTAGGGTTATTGCTAGCAGTTCTTGCCATAGTTGCAACTATAATAGTTGGAAGCTTGCGAATTTTGGACGATGTAACGCGCCGTCTCTTCGTTGGATCCTTGAGTTGTGCTTCTCTCATTTCAATGTTTGCTTCTCCATTGTTTATAATTAAATTGGTGATTCAGACAAAGAGTGTTGAATTTATGCCATTTCATCTCTCACTTTCTACCTTCCTAATGAGCACTTCTTTCTTTCTTTATGGATTACTCAATGAGGATCCCTTCATTTATGCACCAAATGGCATAGGAACCATTTTGGCAATAGTACAATTGATTTTATATTTCTATTATGAGAATAAATCTAGAGCAGACACCAGTGGTGAACCCTTGGTAGTGTCATACACATGA 717 0.3682 MIMSMFAAYSIYTVAKDAAGVAGNIFAFGLFVSPIPTFRRIMRNGSTELFSGLPYVYSLINCLICMWYGTPLISPDNLLVTTVNSIGAVFQFVYIVIFMIYAEKEKKVRMLGLLLAVLAIVATIIVGSLRILDDVTRRLFVGSLSCASLISMFASPLFIIKLVIQTKSVEFMPFHLSLSTFLMSTSFFLYGLLNEDPFIYAPNGIGTILAIVQLILYFYYENKSRADTSGEPLVVSYT 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0399 238 PANTHER RAG1-ACTIVATING PROTEIN 1 11 237 - -
Lal20g0399 238 Gene3D - 139 231 - -
Lal20g0399 238 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET2 11 237 - -
Lal20g0399 238 Pfam Sugar efflux transporter for intercellular exchange 20 106 IPR004316 GO:0016021
Lal20g0399 238 Pfam Sugar efflux transporter for intercellular exchange 140 224 IPR004316 GO:0016021
Lal20g0399 238 Gene3D - 13 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0399 Lal-Chr20 3205374 3208443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0399 3 237 Miscellaneous Gene Families AT3G14770 65.106 4.33e-109 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0399 K15382 - gmx:100305842 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0648 2 3892151 3896992 Lal20g0399 20 3205374 3208443 ECH
Lal20g0399 20 3205374 3208443 Lal20g0399 20 3205374 3208443 ECH
Lal20g0399 20 3205374 3208443 Lal1g1592 1 18289451 18292890 LSH