Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0381 ATGGCAAAGGGAACACTCTCAAAGTTAAACATCGCTATAATTCACCCTGATCTTGGCATAGGTGGAGCTGAAAGATTAATTGTGGATGCAGCTGTTGAACTTGCATCCCATGGTCACAAAGTTCATATTTTTACTGCACACCATGATAAGAATAGATGTTTTGAGGAAACTATTGCTGGTACCTTTCCAGTTACTGTATATGGTTCCTTTCTTCCCCGGCACATATTCTACCGTCTCCATGCCTTGTGTGCATACCTTCGGTGCCTGTTTGTTGCTCTCTGTGTGCTTTTTATGTGGCCATCATTTGATGTCATACTGGTAGATCAGGTCTCTGTAGTTATTCCCATCTTGAAACTTAAAAGGTCAACCAAGGTTGTATTCTATTGTCATTTTCCAGACTTGTTGCTGGCTCAACATTCAACGTTCCTCAGGAGGATGTATAGGAAACCTATAGACTATGTAGAAGAAATAACAAGCGGGATGGCTGATTTGATACTTGTTAACAGCAATTTCACGGCATCTACATTTGCGAATACTTTTACGTATCTCAATGCTAAAGGGATTCAACCTGCCACTCTATACCCAGCTGTGAATGTTGATCAGTTCAGTGAACCCAGTTCTTTTAAGATGAATTTTCTTTCCATTAATCGTTTTGAAAGGAAGAAAAACATAGAATTAGCAATTTCAGCTTTTTCTATGCTTCACTCACCTAAGGGGGTTCTCAAGAATCAAGATGTTAATGCTTCCTTGGTTATTGCAGGTGGCTTTGATGAACGATTGAAGGAGAATGTAGAGTACTTAGAAGAGCTTAAAAATTTAGCTGAAAAAGAAGGGGTCTCAAATCAAGTAAGATTCATCACATCTTGCTCTACAGCTGAAAGGAATGCTCTTCTCTCAGAATGCCTATGTGTCCTTTACACTCCGAAGGATGAGCACTTTGGCATTGTCCCTTTGGAGGCAATGGCTGCTTATAAACCTGTTATTGCATGCAATAGTGGTGGCCCAGTTGAGTCAATCAAGAATGGTGTAACAGGTTTCCTTTGCAATCCTACATCACAAGACTTTTCTTTAGCAATGACTAGATTCATAGAAGATCCCAAAGAAGCTGAAAGATTGGGCAAAGAAGCTAGAAAACATGTTGTTGAGACATTTTCTACAAAGACATTTGGTCAACATTTAAATAGATATATAGTTGACATTCATAGGGGAAAGGAGGATTAA 1221 0.3923 MAKGTLSKLNIAIIHPDLGIGGAERLIVDAAVELASHGHKVHIFTAHHDKNRCFEETIAGTFPVTVYGSFLPRHIFYRLHALCAYLRCLFVALCVLFMWPSFDVILVDQVSVVIPILKLKRSTKVVFYCHFPDLLLAQHSTFLRRMYRKPIDYVEEITSGMADLILVNSNFTASTFANTFTYLNAKGIQPATLYPAVNVDQFSEPSSFKMNFLSINRFERKKNIELAISAFSMLHSPKGVLKNQDVNASLVIAGGFDERLKENVEYLEELKNLAEKEGVSNQVRFITSCSTAERNALLSECLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVESIKNGVTGFLCNPTSQDFSLAMTRFIEDPKEAERLGKEARKHVVETFSTKTFGQHLNRYIVDIHRGKED 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0381 406 Pfam Glycosyltransferase Family 4 20 180 IPR028098 -
Lal20g0381 406 Coils Coil 257 277 - -
Lal20g0381 406 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 7 403 - -
Lal20g0381 406 Pfam Glycosyl transferases group 1 212 378 IPR001296 GO:0016757
Lal20g0381 406 Gene3D Glycogen Phosphorylase B; 10 206 - -
Lal20g0381 406 Gene3D Glycogen Phosphorylase B; 207 384 - -
Lal20g0381 406 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 396 - -
Lal20g0381 406 CDD GT4_ALG2-like 9 393 - -
Lal20g0381 406 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 7 403 IPR027054 GO:0004378|GO:0006486
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0381 Lal-Chr20 3041204 3044927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0381 1 406 Glycosyltransferase AT1G78800 77.396 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0381 K03843 - gmx:100809168 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0381 20 3041204 3044927 Lal20g0381 20 3041204 3044927 ECH
Lal20g0381 20 3041204 3044927 Lal1g1615 1 18562964 18577957 LSH