Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0311 ATGTCCAACTTCTTCTCCCAGTTCCAATCAATCAAGAACACCGCCGATCGCCTTGTCATTTCAGTGGAGGATGTGAGTGACTTGTGGCCAACTGTTAAGGATGCTTTTGAAGCGCGATTGCCATTCAAAAGGGCGTCTTTGAATAACAAGACACGAAATCTTGTCTTTGTTGAGCAATTGCCAGCTGAGTTCATATTAACTACAGATTCAAGACTCCGTAGTCGGTTCCCTCAGGAGCAACTGTTATTTTGGTTTCGAGAGCCGTATGCGACTGTTGTACTTGTTACCTGTGAGGATCTTGACGAGTTCAAAACCATCCTTAAACCACGTCTGAAATTAATTGTCCAAAATGATGAGAGAGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCTAATGATCAGGCAAACAAAATGGCGAAGAAAGTATATGCTAAAATTGAAGTTGAGTTTAGCTCCAAAAAAAGAGAAAGATGTTGCAAATACGATATGCATTTCCCTGAAGCAAACTTTTGGGAAGATTTGGATTCAAAAATAATGGAATGCATCAGAAATACACTGGATAGGCGTGTACAGTTTTATGAGGATGAGATTCGAAAGCTCAGTGAACAGCGTCTCATGCCAGTCTGGAACTTCTGTAATTTTTTCATTCTGAAGGAAAGCTTGGCATTTATGTTTGAAATGGCTCACCTTCATGAAGATGCCTTACGGGAATATGATGAACTTGAACTCTGCTACCTTGAAACAGTTAACATGACCGGAAAGCAAAGGAACTTTGGAGGTGCAGACCATGGGGATGATCAAGCAGCATTGCTTAATCCAGGAAACAAAGCATTGACACAGATTGTCCAAGAGGACTCGTTTAGGGAGTTTGAATTTAGACAATATCTATTTGCCTGTACATCAAAGCTCTTATTCAAGCTGAATCGTCCCTTTGAGGTTGCATTGCGGGGTTATTCTTTCATAATAAGCTTTTCAAAATCTTTGGCATCACGTGAGCATATTCTGCCTTTTTGTATGCGTGAAGTCTGGGTGATAACTGCTTGCTTGGCTTTAATTGAAGCAACAATTTCTCATTATAATGAAGGACATGTGGTGCCTGACATAGAGAAGGAGTTCTTTCGTCTTCTGGGTGACCTGTATTCACTTGCTAGAGTTAAGTTCTTGAGAGTTGCGTATTTAGTTGGGTATGGAACTGATATAGAAAGAAGTCCTGTCAACAGTGCTTCTCTCAGCTTACTTCCTTGGCCTAAGCCAGCAGTTTGGCCTTCTGTTCCTGCTGATGCATCAGTAGAGGTGCTTGAGAAAGAGAAGCTGATTCTCCAAACAACTCCTAGAACCAAACACTTTGGTATCCAGAGGAAACCCTTGCCTCTTGAACCTACTGTACTTCTACGAGAGGCCAACAGGCGGAGGGCTTCACTTTCAGCTGGAAATGTGTTTGAAATGTTTGACAGTCGCCAGGGTACATTGGATGGATCACCATCACAAAAACTACATGCAAGTTCCATGATACGTACTTATTCTTCACCAGGAAATGTCGATAGCTCAATTGACCGACCAATGAGGCTTGCTGAGATTTATATAGCCGCTGAGCATGCTTTGAAGCAAACCATTTCTAATCCAGAACTGTTGACATCATTATCATCATCTGAGGAGTTTGAGCAAAAGTATTTGGAGCTAACTAAAGGTGCTGCTGACAATTACCATCGCTCCTGGTGGAAAAGACATGGAGTTGTCCTTGATGGTGAACTAGCAGCAGTCGCCTTTAAGCATGGACATTTTGATCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTTTATTCTGGTGAAGGATGGCAGGACTTGTTGGCTGAGGTCCTTCCCAATTTAGCTGAGTGTCAGAAGATACTCAATGATCAAGCTGGCTATTTACTATCCTGTGCGAGGTTACTTTCTCTTGATGAAGGACTATTTTTGACCAAGGAGCGTCAAGCATTTCAGTCAGAAGTTCTACGTCTTGCTCATAGTGAAATGAAGGACCCTGTACCACTTGATGTATCATCATTAATTACATTTTCTGGCAATCCTGGGCCTCCAATGGAGTTATGTGATAGGGATCCTGGTTCCCTTTCTGTGACTCTTTGGAGTGGTTTTCCAGATGATATAACTCTTGATTCAATCAGTCTTACATTAACACCAACACACAATGCTGATGAAGGTGTGAAGGCGTTGAAGAGTTCTACAGCTATTGTCTTGCATCCTGGTCGGAATACTATTACCTTGGATCTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTTACTGGACAGATAGGGCAGTTGAGTTTTAGATCTCATAGTTTTTCAAAAGTTGGTCCTGCAGATAGTGATGATTTTATGAGTTACGAAAAGCCAGCTAAACCTATTCTTAAGGTTGCCAAACCCAGAGCCCTTGTTGATCTTGAAGCAGCTGTTTCATCCGCCTTGTTAATAAATGAGCATCAATGGGTTGGCATTTTAGTTCGACCAATAAATTACTCTCTCAAAGCTGCTGTCTTGCATATTGATACTGGTCCTGGATTGGAGATTGAAGATTCACATATAATTGAGATGGAAAGTTATTCTAGTGTATCACAGAATGATGTACATGTGCACAACGATGGTTCTCAAATAGAATCTTTGAATTCTGGAAAAAAATTTGTACGTTTGTCTCTTCAAGATGGTAAAATAGAGTTTCCAAATTGGGCAAGTGAGACACCTTCTACTCTTTGGGTTCTGATTCGTGCCGTCAGCGAGACGCTCAGCAGAGGATCGTCTTCAGCCACAACTAGAAGTGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTTGAATTTGGAGTATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTGCATTTTACATATCCTTTCCATGTTACAACTTGTGTTACTGATAAATGCAATGACGGTACCCTGCTTCTTCAGGTTATACTTCACTCTGAAGTAAAGGCTAAACTGACCATATATGATGCTTGGCTCGATCTTCAAGATGGATTTGTACATAGTGGAGAAACGGAGGGTAGACCTACTTCAAGTGACTTCCCACTAGTCATATCTCCCACTTCCAAAGCGGGAATTTTGTTTAGTATCTGCCTTGGCAAGACAAACGAAGAAGAAGCCAGAAAACAATCAGAAAGCATATTAAATGTCAGATATGGAATTTCCGGCGATAGAACAATTGGAGCCCACCCTCCTCTCATGAATGAGTCTACTAGAGTTGATGGTGCCAGACAAGAGATGATCTTCAGGAGCGTAATTACTTTGCAAAAGCCCGTTCTTGATCCATGCCTAGCTGTTGGTTTTCTTCCTCTCCCTTCAGATGGCCTAAGAGTTGGGCAACTAGTTAAGATGCAATGGAGGGTGGAAAGGTTAAAGGATTTGAATAAAAAACAAGTCTCTGAACAGAATGCTGAGGTGCTATATGAGGTAAATGCTAATTCGGGAAATTGGATGATAGCTGGGAGGAAAAGAGGGCACGCGTCTCTCTCCACGAAACAAGGTGCAAGGATCGTTATCTCAATTTTATGCATGCCACTGGTGGCTGGTTATGTACGCCCGCCAGTACTTGGGTTACCGGATGTTGATGACGCTGATATAAGCTGTAAACCTGCCGGACCACATCTTGTTTGTGTTTTACCCCCAGCTCTCAGCTCATCCTTCTGCATTCCGGTTAATTCATGA 3747 0.4182 MSNFFSQFQSIKNTADRLVISVEDVSDLWPTVKDAFEARLPFKRASLNNKTRNLVFVEQLPAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQANKMAKKVYAKIEVEFSSKKRERCCKYDMHFPEANFWEDLDSKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMTGKQRNFGGADHGDDQAALLNPGNKALTQIVQEDSFREFEFRQYLFACTSKLLFKLNRPFEVALRGYSFIISFSKSLASREHILPFCMREVWVITACLALIEATISHYNEGHVVPDIEKEFFRLLGDLYSLARVKFLRVAYLVGYGTDIERSPVNSASLSLLPWPKPAVWPSVPADASVEVLEKEKLILQTTPRTKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFEMFDSRQGTLDGSPSQKLHASSMIRTYSSPGNVDSSIDRPMRLAEIYIAAEHALKQTISNPELLTSLSSSEEFEQKYLELTKGAADNYHRSWWKRHGVVLDGELAAVAFKHGHFDQAAKSYEKVCALYSGEGWQDLLAEVLPNLAECQKILNDQAGYLLSCARLLSLDEGLFLTKERQAFQSEVLRLAHSEMKDPVPLDVSSLITFSGNPGPPMELCDRDPGSLSVTLWSGFPDDITLDSISLTLTPTHNADEGVKALKSSTAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLSFRSHSFSKVGPADSDDFMSYEKPAKPILKVAKPRALVDLEAAVSSALLINEHQWVGILVRPINYSLKAAVLHIDTGPGLEIEDSHIIEMESYSSVSQNDVHVHNDGSQIESLNSGKKFVRLSLQDGKIEFPNWASETPSTLWVLIRAVSETLSRGSSSATTRSESIVDGMRTIALKLEFGVFHNQIFERTLAVHFTYPFHVTTCVTDKCNDGTLLLQVILHSEVKAKLTIYDAWLDLQDGFVHSGETEGRPTSSDFPLVISPTSKAGILFSICLGKTNEEEARKQSESILNVRYGISGDRTIGAHPPLMNESTRVDGARQEMIFRSVITLQKPVLDPCLAVGFLPLPSDGLRVGQLVKMQWRVERLKDLNKKQVSEQNAEVLYEVNANSGNWMIAGRKRGHASLSTKQGARIVISILCMPLVAGYVRPPVLGLPDVDDADISCKPAGPHLVCVLPPALSSSFCIPVNS 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0311 1248 PANTHER BNAC09G30770D PROTEIN 1 1246 - -
Lal20g0311 1248 Coils Coil 185 205 - -
Lal20g0311 1248 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1130 1207 IPR022233 -
Lal20g0311 1248 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 1 1246 IPR045126 GO:0048193|GO:1990071
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0311 Lal-Chr20 2428664 2440902 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0311 K20307 - gmx:100787264 2221.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0311 20 2428664 2440902 Lal20g0311 20 2428664 2440902 ECH
Lal20g0311 20 2428664 2440902 Lal1g1649 1 18908675 18922449 LSH