Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0293 ATGTTTTCTTCTACAATCTCTCACAAACCCTTCCTTCATTCCCTTCACATTCATCACCAGAGCACAATTGATACAGTTAAGTGGGAGAGTTTGGTGTTTAACAAGTCATCAAATTTCACTACAAATCCGGTGTTGTTTGCAAAGGGGTTCAAGCTGAATTGCTTGCTTGGTAGAGAGATGGATGTAGGTACATCATCTTCGGTAGATGGCGCCGCAGGGTTATTAAATGGTATTGCCATGTTATCTATGCTTACACCAGATATATATGAAGAGGTGCTTGTAGAAGAGGAGGTAAGAGAGCCTGATATTTCGACAATGGTGATGAATTTCGAGAATAAGTTTGATCCTTATGGATCTGTTAGTACTCCACTTTATCAAACTGCTACTTTTAAGCAGCCTTCTGCAATAGAAAATGGTCCCTATGACTATACCAGAAGTGGAAATCCTACTCGAGATGCTTTAGAAAGTTTGCTGGCAAAACTTGACAAAGCAGATAGAGCCCTTTGCTTCACAAGCGGAATGGCTGCGTTAAGTGCTGTCTCTCATCTTGTTAGCAATGGTGAGGAAATCGTTGCCGGGGATGATCTGTATGGTGGATCCGATAGGTTGCTGTCCCAAGTACTTCCAAAGACTGGAGTTGTGGTGAAACGGGTAAATACAAGTGATCTAAATGAAGTTGCGTCTGCTATTGGACCCCAGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGACTACAAATTTCTGATATTCGAAAAATAGCAGAGTTGGCTCATGCACATGGTGCTCTTGTGTTGGTGGACAATAGTATAATGTCACCTGTGTTGTCCCAACCATTGGAACTTGGAGCAGATATTGTCATGCACTCAGCTACCAAATTTATTGCTGGTCACAGTGATATTATGGCTGGTGTGCTTGCTGTGAAAGGTGAAAGATTAGGAAAAGAATTATATTTCTTACAAAATGCTGAGGGTTCAGGCTTAGCCCCGTTTGACTGTTGGCTCTGCTTGCGAGGAATCAAGACAATGTCCCTTCGAGTCGAGAAGCAGCAGGATAATGCACAGAAGATTGCCGAGTTCCTTGCTTCCCATCCTCGAGTGACAAAAGTAAACTATCCCGGTCTGGTTCTTCATCCTGGACGTGATTTACACTATTCTCAGGCAAAGGGTGCAGGATCCGTGCTTAGCTTTTTAACCGGTTCACTCGCACTCTCTAAGCATATTGTCGAAAAAACGAAGTACTTCAGCATAACCGTCAGTTTCGGTAATAATCCTCCCACCCTAAACTTCAGCATAAACGTCATCATGAGTTCAAATCGTGGAAACAGTCTCTCCGCTTGCAGGAAAAGGCTGTGGACATTTACCCTTGGGAGGAGTGTAAAGTCCCTGATCAGCATGCCATGCTTTATGTCACATGCAAGTATACCTGCCACAGTTCGTGAGGCAAGAGGTTTAACTGAAGATCTTGTTAGAATATCTGTGGGAATTGAAAATGTCAATGATCTCATTGCTGATCTACAAATTGCACTTACAACAGGGCCTTTGTGA 1551 0.4313 MFSSTISHKPFLHSLHIHHQSTIDTVKWESLVFNKSSNFTTNPVLFAKGFKLNCLLGREMDVGTSSSVDGAAGLLNGIAMLSMLTPDIYEEVLVEEEVREPDISTMVMNFENKFDPYGSVSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALSAVSHLVSNGEEIVAGDDLYGGSDRLLSQVLPKTGVVVKRVNTSDLNEVASAIGPQTKLVWLESPTNPRLQISDIRKIAELAHAHGALVLVDNSIMSPVLSQPLELGADIVMHSATKFIAGHSDIMAGVLAVKGERLGKELYFLQNAEGSGLAPFDCWLCLRGIKTMSLRVEKQQDNAQKIAEFLASHPRVTKVNYPGLVLHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVEKTKYFSITVSFGNNPPTLNFSINVIMSSNRGNSLSACRKRLWTFTLGRSVKSLISMPCFMSHASIPATVREARGLTEDLVRISVGIENVNDLIADLQIALTTGPL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0293 516 PANTHER BNAC04G24570D PROTEIN 460 516 - -
Lal20g0293 516 PANTHER BNAC04G24570D PROTEIN 45 425 - -
Lal20g0293 516 TIGRFAM cysta_beta_ly_E: cystathionine beta-lyase 104 424 IPR006238 GO:0004121|GO:0071266
Lal20g0293 516 Gene3D Aspartate Aminotransferase, domain 1 344 440 IPR015422 GO:0003824
Lal20g0293 516 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 460 516 IPR000277 GO:0019346|GO:0030170
Lal20g0293 516 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 45 425 IPR000277 GO:0019346|GO:0030170
Lal20g0293 516 SUPERFAMILY PLP-dependent transferases 460 511 IPR015424 -
Lal20g0293 516 Gene3D - 102 343 IPR015421 GO:0003824
Lal20g0293 516 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 286 300 IPR000277 GO:0019346|GO:0030170
Lal20g0293 516 Gene3D Aspartate Aminotransferase, domain 1 444 514 IPR015422 GO:0003824
Lal20g0293 516 Pfam Cys/Met metabolism PLP-dependent enzyme 454 511 IPR000277 GO:0019346|GO:0030170
Lal20g0293 516 Pfam Cys/Met metabolism PLP-dependent enzyme 105 424 IPR000277 GO:0019346|GO:0030170
Lal20g0293 516 CDD CGS_like 118 511 IPR000277 GO:0019346|GO:0030170
Lal20g0293 516 SUPERFAMILY PLP-dependent transferases 110 426 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0293 Lal-Chr20 2227390 2231691 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0293 K01760 - gmx:100812354 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1382 11 17336650 17343560 Lal20g0293 20 2227390 2231691 LSH