Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1382 ATGTTTTCTTCTTCCATCTCTCTTAAACCCTTATTTCATTCCAACGCTCAGATCACAACTGGTACAAATAAGTGGGAGAACCTGTGGTTTAACAAGTCATCAAAATTCATTACAAACCCAGTGTTGTTTGCAAAAGGGTTCAAGGTGAATTGCTTGGTTGAAAGAGAGATGAATGTAGGTACATCATCTATGGTAGATGGTGAAGCAGGGTTATTAAATGAAGAGGTGTTTGTAGAAAATGAGACAGGGGAGACTGATATTTCAACAATGGTGATGAATTTCGAGAATAAGTTTGATCCATATGGATCTGTCAATACTCCACTTTACCAAACTGCTACTTTTAAGCAGCCATCTGCAATAGAAAATGGTCCCTATGACTATACCAGAAGTGGAAATCCTACTCGAGATGCTTTAGAGAGCTTACTGGCAAAACTTGATAAAGCTGATAGAGCCCTATGCTTCACCAGCGGAATGGCTGCTTTAAGTGCCGTCTCTCATCTTGTTAGCACTGGTGAGGAAATTGTTGCTGGAGATGATCTGTATGGTGGCTCGGATAGGTTGCTGTCCCAAATACTTCCAAAGGCTGGAGTTGTGGTGAAACGGGTAAATACAAGTGATCTAAATGAAGTTGCATCTTCTATTGGACCCCGGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCCCGGCTACAAATTTCTGATATTCGAAAAATAGCAGAGATGGCTCATGCACATGGTGCTCTGGTGTTGGTGGACAATAGTATAATGTCACCTGTGTTGTCTCAGCCATTGGAACTTGGAGCAGATATTGTCATGCACTCGGCTACCAAATTTATATCTGGCCATAGTGATATTATGGCTGGTGTGCTTGCTGTGAAAGGTGAAAGGTTAGGAAAAGAATTATATTTCTTACAAAATGCTGAGGGTTCAGGCTTAGCCCCGTTTGACTGTTGGCTCTGCTTGCGAGGAATCAAGACAATGGCCCTTCGAGTTGAAAAGCAGCAGGATAATGCACAGAAGATTGCTGAGTTCCTTGCCGCCCATCCTCGAGTAAGGAAAGTAAACTACGCTGGTCTTCGTGATCATCCTGGTCGTGATATACACTATTCTCAGACAAAGGGTGCAGGATCTGTGCTTAGCTTTTTAACAGGTTCACTGGCACTCTCAAAGCATGTTGTTGAAACTACCAAGTACTTCAGCATAACTGTTAGTTTTGGAAGTGTAAAGTCCCTGATCAGCATGCCATGCTTTATGTCCCATGCAAGCATACCTGCAACAGTTCGTGAGGCAAGAGGCTTAACTGAAGATCTTGTGCGTATATCTGTGGGGATTGAAGATGTGAATGATCTTATAGCTGATCTTGAAAATGCACTTAGTACTGGTCCTTTGTAA 1395 0.4251 MFSSSISLKPLFHSNAQITTGTNKWENLWFNKSSKFITNPVLFAKGFKVNCLVEREMNVGTSSMVDGEAGLLNEEVFVENETGETDISTMVMNFENKFDPYGSVNTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALSAVSHLVSTGEEIVAGDDLYGGSDRLLSQILPKAGVVVKRVNTSDLNEVASSIGPRTKLVWLESPTNPRLQISDIRKIAEMAHAHGALVLVDNSIMSPVLSQPLELGADIVMHSATKFISGHSDIMAGVLAVKGERLGKELYFLQNAEGSGLAPFDCWLCLRGIKTMALRVEKQQDNAQKIAEFLAAHPRVRKVNYAGLRDHPGRDIHYSQTKGAGSVLSFLTGSLALSKHVVETTKYFSITVSFGSVKSLISMPCFMSHASIPATVREARGLTEDLVRISVGIEDVNDLIADLENALSTGPL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1382 464 Pfam Cys/Met metabolism PLP-dependent enzyme 89 459 IPR000277 GO:0019346|GO:0030170
Lal11g1382 464 SUPERFAMILY PLP-dependent transferases 94 460 IPR015424 -
Lal11g1382 464 TIGRFAM cysta_beta_ly_E: cystathionine beta-lyase 88 461 IPR006238 GO:0004121|GO:0071266
Lal11g1382 464 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 43 464 IPR000277 GO:0019346|GO:0030170
Lal11g1382 464 CDD CGS_like 102 460 IPR000277 GO:0019346|GO:0030170
Lal11g1382 464 PIRSF CGS 75 462 IPR000277 GO:0019346|GO:0030170
Lal11g1382 464 Gene3D Aspartate Aminotransferase, domain 1 328 461 IPR015422 GO:0003824
Lal11g1382 464 PANTHER BNAC04G24570D PROTEIN 43 464 - -
Lal11g1382 464 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 270 284 IPR000277 GO:0019346|GO:0030170
Lal11g1382 464 Gene3D - 86 327 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1382 Lal-Chr11 17336650 17343560 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1382 K01760 - gmx:100812354 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1382 11 17336650 17343560 Lal20g0293 20 2227390 2231691 LSH