Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0288 ATGTCTTCTTCAATGACCAAGTTGTCCAGAATTATCATTAGAGCTTCTTCCAATTGGAGAAAATCATGTTACTTTTATTCCACTGCTTCTGAACCAGAAAGCCTTTTGGGTCTGAAGGATTATGCTGATTATAGAAGATCTCTCTATGGCCAAATTACACATAAGGCTCTTCTTGTTGATGCTGTTGGCACCCTTGTTATCCCTTCTCAACCCACGGCTCAAATATATAGGAAGATTGGGGAGAAGTATGGGGTGGAGTACTCAGAGGATGAGATATTGCACAGATATAGAAGAGCTTATGGTCAGCCTTGGGGTAAATCTCGTCTCAGATATGTTAATGATGGTCGACCCTTCTGGCAATACATAGTTAGTTATTCCACTGGTTGTTCAGATTCTCAGTACTTTGAAGAACTTTATAACTATTATATGACCGACAAGGCATGGCATCTCTGTGATCCCGAGGCTGAAGATGTGTTTAAAGCTTTGAGAAAATCAGGTGTAAAATTGGCTATAGTGTCAAATTTTGACACTCGGTTAAGACCTCTTTTGCGAGCATTAAATTGTGATAATTGGTTTGATGCTGTAGCAGTATCAGCTGAGGTTGCAGCAGAGAAGCCAAATCCAACGATATTTCTTAAAGCTTGTGATCTGTTGGGCGTGAAGCCCGAGGATGCTGTTCATGTCGGGGATGATCGTAGAAATGATATATGGGGTGCCAGAGATGCCGGGTGTGATGCCTTGCTTTGGGGAAGCGATGTTCACTCCTTTAAGGAGGTAGCTCAGAGAATTGGGGTTCAGTTCTGA 804 0.4216 MSSSMTKLSRIIIRASSNWRKSCYFYSTASEPESLLGLKDYADYRRSLYGQITHKALLVDAVGTLVIPSQPTAQIYRKIGEKYGVEYSEDEILHRYRRAYGQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDSQYFEELYNYYMTDKAWHLCDPEAEDVFKALRKSGVKLAIVSNFDTRLRPLLRALNCDNWFDAVAVSAEVAAEKPNPTIFLKACDLLGVKPEDAVHVGDDRRNDIWGARDAGCDALLWGSDVHSFKEVAQRIGVQF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0288 267 SFLD Haloacid Dehalogenase 55 247 - -
Lal20g0288 267 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN 21 266 - -
Lal20g0288 267 TIGRFAM HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 153 243 IPR006439 -
Lal20g0288 267 Gene3D - 70 143 IPR044924 -
Lal20g0288 267 SUPERFAMILY HAD-like 55 258 IPR036412 -
Lal20g0288 267 CDD HAD_dREG-2_like 155 266 - -
Lal20g0288 267 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 55 247 - -
Lal20g0288 267 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 144 247 IPR006439 -
Lal20g0288 267 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 54 65 IPR006439 -
Lal20g0288 267 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 162 175 IPR006439 -
Lal20g0288 267 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 192 208 IPR006439 -
Lal20g0288 267 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 210 230 IPR006439 -
Lal20g0288 267 TIGRFAM DREG-2: HAD hydrolase, REG-2-like, family IA 55 248 IPR011949 -
Lal20g0288 267 Gene3D - 59 251 IPR023214 -
Lal20g0288 267 Pfam Haloacid dehalogenase-like hydrolase 63 247 IPR041492 -
Lal20g0288 267 PANTHER - 21 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0288 Lal-Chr20 2158382 2162274 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0288 - - adu:107492671 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1378 11 17304054 17308302 Lal20g0288 20 2158382 2162274 LSH