Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0285 ATGAAGCTCATCAATAGCCTCAACCCCAAGAACTTGAAACTCAATCCAAAACGGTTATTCCGTTCCAAGAAACAACGTTCCACTCTTTCAAGATCCGATCCACTATCATTCGGGTCCGGATCCTTATCCTCTTCATCTAAATCCTCCACACATAAAACGGAAACCGGACCAACCGGTTCCCTAACTCCTACAAGTGTACTCCCTCACCTTTCACACGACTGGACCGCCATCTCCGGCGACCTCCACTTCGACCTTGCCAACGCCTTCCGTTTCATAGACCGCGACAACGACGGCGTCGTTTCGCGGAACGAGCTCGAGGCGTTGTTAATTCGCCTCGCGGCGGCGCCGGAAGTGGCGGTGATGCTGAGCGAGGTGGAGTTCGACGGGGAAGGGTGTATAACTGTTGAGGCGTTGATGAATCGAATTGGATCGGGTTCCGGGTTGGTTGAGAGTCCGGATGAGTTGATGGAGGCTTTCGCCGTTTTCGACACGGATCACGACGGGAGGATTTCGGCGGAGGAGTTGTTAAGGATTTTTCAGGTGATCGGAGATGAGCGGTGCACGTTAGAGGAGTGTCGGCGCATGATAGAAAGTGTTGATAGAAACGGGGATGGTTTCGTGTGCTTCGAGGACTTTTCGCGTATGATGGAGTTGCAGCGATGA 663 0.5264 MKLINSLNPKNLKLNPKRLFRSKKQRSTLSRSDPLSFGSGSLSSSSKSSTHKTETGPTGSLTPTSVLPHLSHDWTAISGDLHFDLANAFRFIDRDNDGVVSRNELEALLIRLAAAPEVAVMLSEVEFDGEGCITVEALMNRIGSGSGLVESPDELMEAFAVFDTDHDGRISAEELLRIFQVIGDERCTLEECRRMIESVDRNGDGFVCFEDFSRMMELQR 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0285 220 ProSitePatterns EF-hand calcium-binding domain. 163 175 IPR018247 -
Lal20g0285 220 Pfam EF-hand domain pair 154 216 IPR002048 GO:0005509
Lal20g0285 220 ProSiteProfiles EF-hand calcium-binding domain profile. 150 185 IPR002048 GO:0005509
Lal20g0285 220 SUPERFAMILY EF-hand 84 216 IPR011992 -
Lal20g0285 220 MobiDBLite consensus disorder prediction 29 65 - -
Lal20g0285 220 ProSitePatterns EF-hand calcium-binding domain. 200 212 IPR018247 -
Lal20g0285 220 MobiDBLite consensus disorder prediction 1 65 - -
Lal20g0285 220 Gene3D - 40 142 - -
Lal20g0285 220 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 218 - -
Lal20g0285 220 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lal20g0285 220 CDD EFh 154 216 IPR002048 GO:0005509
Lal20g0285 220 Pfam EF hand 88 108 IPR002048 GO:0005509
Lal20g0285 220 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 1 218 - -
Lal20g0285 220 Gene3D - 145 220 - -
Lal20g0285 220 ProSiteProfiles EF-hand calcium-binding domain profile. 187 220 IPR002048 GO:0005509
Lal20g0285 220 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lal20g0285 220 SMART efh_1 154 182 IPR002048 GO:0005509
Lal20g0285 220 SMART efh_1 84 112 IPR002048 GO:0005509
Lal20g0285 220 SMART efh_1 191 219 IPR002048 GO:0005509
Lal20g0285 220 SMART efh_1 117 145 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0285 Lal-Chr20 2122962 2123624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0285 10 220 EF-hand Containing Proteins AT3G10190 48.837 5.07e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0285 K13448 - gmx:100790734 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0285 20 2122962 2123624 Lal20g0285 20 2122962 2123624 ECH
Lal11g1373 11 17250629 17251276 Lal20g0285 20 2122962 2123624 LSH