Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1373 ATGAAGCTCATTAATAAACTCAAACTCAGTCCAAAACGGTTTTTTCGTTCAAAGAAAGACCGTTCCGCTGTTTCAAGATCCGACCCGCTATCATTCGGGTCAGAATCTTTATCTTCTTCTTCTGAGGGGTCCACTCATAAGACGGCAACCGGAGCAACCGGTTCTCTAACTCCGACCAGTGTTCTCCCTAACGTTTCCGGCGACTGGACCGCCATATCCGGCGATCTCCACTCCGACCTGGCTAACGCGTTCCGCTTCATCGACCGCGATAGTGACGGTGTAATTTCGCGGCATGAGCTTGAGGCGTTGTTAAATCGGGTTGCGGCGGCGCCGGAGGTGGCAATGATGCTGAGCGAGGTTGAGTTCGACGGGGAAGGGTGCATAACCGTGGAGGCGCTGATGAACCGTGTCGGGTCGGATTCCGGGTCATGTGAAAACGCGGATGAGCTGATGGAGGCTTTTGCGGTGTTCGACACCGATCGTGATGGGAGGATCTCGGCGGAGGAGTTGTTTAGAGTTTTTGAGGCAATCGGAGAAGAGCGGTGCACGTTAGAGGAATGCAAGCGTATGATAGAGAGTGTTGATAGAAAAGGAGATGGGTTCGTGTGCTTTGAGGACTTTTCGCGTATGATGGAGTTGCAGCGATGA 648 0.5262 MKLINKLKLSPKRFFRSKKDRSAVSRSDPLSFGSESLSSSSEGSTHKTATGATGSLTPTSVLPNVSGDWTAISGDLHSDLANAFRFIDRDSDGVISRHELEALLNRVAAAPEVAMMLSEVEFDGEGCITVEALMNRVGSDSGSCENADELMEAFAVFDTDRDGRISAEELFRVFEAIGEERCTLEECKRMIESVDRKGDGFVCFEDFSRMMELQR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1373 215 Pfam EF-hand domain pair 149 211 IPR002048 GO:0005509
Lal11g1373 215 ProSitePatterns EF-hand calcium-binding domain. 158 170 IPR018247 -
Lal11g1373 215 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Lal11g1373 215 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Lal11g1373 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 213 - -
Lal11g1373 215 MobiDBLite consensus disorder prediction 27 60 - -
Lal11g1373 215 PANTHER CALCIUM-BINDING PROTEIN CML35-RELATED 1 213 - -
Lal11g1373 215 Pfam EF hand 83 103 IPR002048 GO:0005509
Lal11g1373 215 ProSiteProfiles EF-hand calcium-binding domain profile. 182 215 IPR002048 GO:0005509
Lal11g1373 215 SMART efh_1 112 140 IPR002048 GO:0005509
Lal11g1373 215 SMART efh_1 149 177 IPR002048 GO:0005509
Lal11g1373 215 SMART efh_1 186 214 IPR002048 GO:0005509
Lal11g1373 215 SMART efh_1 79 107 IPR002048 GO:0005509
Lal11g1373 215 Gene3D - 135 215 - -
Lal11g1373 215 CDD EFh 149 211 IPR002048 GO:0005509
Lal11g1373 215 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Lal11g1373 215 MobiDBLite consensus disorder prediction 17 60 - -
Lal11g1373 215 Gene3D - 34 134 - -
Lal11g1373 215 SUPERFAMILY EF-hand 68 211 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1373 Lal-Chr11 17250629 17251276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1373 8 215 EF-hand Containing Proteins AT3G10190 49.528 1.40e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1373 K13448 - gmx:100815559 232.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1373 11 17250629 17251276 Lal11g1373 11 17250629 17251276 ECH
Lal11g1373 11 17250629 17251276 Lal20g0285 20 2122962 2123624 LSH