Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0252 ATGGGAGAAGCACCAGCATTCCTTGTTGATGACTTGAAAAATGAGTCTCTTAATGGCCTTCAATTGAAAAATGGAACTAGCAAAAGTACTACCATCATTGGTGACAAAACATATGTCATTGGTGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACCGTAACCTTGGCGAATGGGTTCATCCCACTGTTCATGGTACAAAACCTATGTCATGCAAAGGCCACTCATCTGTTCTTTTGAAAGACCGAATATTAATTCTTAAGAAGGGTTCTAAACCAGATGATCAGATATGGTTTTTGGAGTTTGATACCCAATATGTTAGGCAGCTACAAAAGAATTTGGGGACTGAGGTTGTTGCTTGGAGTAAGGGTGTAACAGGCAATGCTGAGAAGCCTATTGTTATTAGTGGTCCTTCTGGAGTAGGTAAAGGAACATTGATATCAATGCTCATGAAGGAATTCCCATCTATGTTTGGTTTTTCGGTGAGCCATACCACCCGTGCTCCAAGAAATATGGAGAAAGATGGGGTCCATTATCATTTTACTGATAAGTGTTTAATGGAGAAAGAGATTAAGGATGGGAAATTTCTTGAGTTTGCTTCTGTCCATGGCAATCTATATGGAACCAGTGTTGAGGCTGTTGAAGTGGTGGCTGATGCAGGGAAAAGATGTATACTTGATATTGATGTTCAAGGGGCAAGGTCTGTGAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTATCTGTCCTCCATCAATGGAAGATTTGGAGAAGCGTCTACGTGGAAGAGGGACAGAGACAGAGGAACAGGTCCTGAAGCGATTACGAAATGCCGAGGCTGAGATCAAGGAAGGGAAGTCTTCTAAGATATTTGATTTTATCTTATACAATGACAACCTTGAGGAGTGTTATGAGAAACTTAAGAAATTATTAGGACTTGATGGTTTTGTTGCTGCTGCACCTAAATCAGCACCTAGAGAGATTATTCTACCAATGGACCACTCATTGTCAAAGATAGATGACAAGATCATCATAAACTGCATGCCTTCAGAACTAGACAAAGATTCAAAGAATTTGATCATGTTGGATGTTTCCTCACTAAAAGGCGGTGCACCCGGTCGGACAAGAGGGTTGGATTTTCAAGCCATAAGCTCATTTTCAGAGGGCTTGACCGGGGCGAATCAGTTTAGCTAA 1203 0.4098 MGEAPAFLVDDLKNESLNGLQLKNGTSKSTTIIGDKTYVIGGADDGTLSIEVQIFDRNLGEWVHPTVHGTKPMSCKGHSSVLLKDRILILKKGSKPDDQIWFLEFDTQYVRQLQKNLGTEVVAWSKGVTGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRNMEKDGVHYHFTDKCLMEKEIKDGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEDLEKRLRGRGTETEEQVLKRLRNAEAEIKEGKSSKIFDFILYNDNLEECYEKLKKLLGLDGFVAAAPKSAPREIILPMDHSLSKIDDKIIINCMPSELDKDSKNLIMLDVSSLKGGAPGRTRGLDFQAISSFSEGLTGANQFS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0252 400 Pfam Guanylate kinase 133 314 IPR008145 -
Lal20g0252 400 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
Lal20g0252 400 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Lal20g0252 400 Gene3D Guanylate Kinase phosphate binding domain 165 224 - -
Lal20g0252 400 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 340 - -
Lal20g0252 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Lal20g0252 400 SUPERFAMILY Galactose oxidase, central domain 29 113 IPR011043 -
Lal20g0252 400 Gene3D - 19 139 IPR015915 GO:0005515
Lal20g0252 400 CDD GMPK 135 311 - -
Lal20g0252 400 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Lal20g0252 400 Gene3D - 140 310 IPR027417 -
Lal20g0252 400 PANTHER GUANYLATE KINASE-RELATED 1 340 - -
Lal20g0252 400 SMART gk_7 132 318 IPR008145 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0252 Lal-Chr20 1797728 1801206 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0252 K00942 - gmx:100808931 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0252 20 1797728 1801206 Lal20g0252 20 1797728 1801206 ECH
Lal11g1330 11 16895790 16899134 Lal20g0252 20 1797728 1801206 LSH