Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1330 ATGGGAGAGGCACCAGCATTCCTTGTTGATGACTTGCAAAATGAGCCTCTCAATGGCTTTGAATTGAAAAATGGAACTTGCAAAACAACTACCACCGTTGGCGACAAAACGTATGTCATTGATGGAGCTGATGATGGAACTTTGTCCATTGAAGTTCAAATTTTTGACCGTAGTCATGGCAAATGGGTTCATCCCACTGTGCACGGCGTCAAACCGTTGTCATGCAAAGGCCACTCAGCCGTGCTTTTGAAGGACCGAATACTAATTCTTAAGAAGGGTTCTAAACCAGATGATCAAATATGGTTTTTGGAGTTTGACACACAATATGTTAGGCAACTGCAAAATAATTTGGGGACTGAGGTTGTTGTTTGGAGTAAGGGTGTGACAGGCAATGCTGAAAAGCCTATTGTTATTAGTGGTCCTTCTGGAGTAGGTAAAGGAACATTGATATCAATGCTCATGAAGGAATTCCCATCAATGTTTGGTTTTTCTGTGAGCCACACCACCCGTGCTCCAAGAAATATGGAGAAAGATGGGGTCCATTACCATTTTACTGAGAAGAGTCTAATGGAGAAAGAGATTAAGGACGGAAAATTTCTTGAGTTTGCTTCTGTTCATGGGAATCTATATGGGACCAGTGTTGAGGCTGTTGAAGTGGTAGCAGATGCCGGGAAAAGATGTATACTAGACATTGATGTTCAAGGGGCAAGATCTGTGAGGGCTAGTTCTCTTGAAGCCATATTCATATTTATCTGTCCCCCGTCAATGGAAGATCTGGAGAAGCGCCTGCGTGGCAGAGGGACAGAGACAGAGGAACAGGTCCTGAAACGGCTTCGAAATGCCGAGGCTGAGATTGAGCAAGGGAAGTCTTCCAAGATATTTGATTTCATCCTATACAATGACAACCTTGAGGAGTGTTACGAGAAACTTAAGAAATTATTGGGCCTAGATGATTTTGTCACTGCCTCACCTAAATCAGCACCTAGAGAGATCATTCTACCAATGAACCACTCATTGTCAAAGATAGATGACAAAATCATCATAAACTGCATGTCTTCAGAACTAGAAAAGGAATCAAAGAATTTGATCATGTTGGATGTATCTTCACTAAAAGGCGGTGCACCTGGTCGGACAAGAGGGTTAGATTTTCAAGCCGTAAGCTCATTTTCCGATGGTTTGACCGGGATGGACCAGTTTAGCTAA 1203 0.4273 MGEAPAFLVDDLQNEPLNGFELKNGTCKTTTTVGDKTYVIDGADDGTLSIEVQIFDRSHGKWVHPTVHGVKPLSCKGHSAVLLKDRILILKKGSKPDDQIWFLEFDTQYVRQLQNNLGTEVVVWSKGVTGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRNMEKDGVHYHFTEKSLMEKEIKDGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEDLEKRLRGRGTETEEQVLKRLRNAEAEIEQGKSSKIFDFILYNDNLEECYEKLKKLLGLDDFVTASPKSAPREIILPMNHSLSKIDDKIIINCMSSELEKESKNLIMLDVSSLKGGAPGRTRGLDFQAVSSFSDGLTGMDQFS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1330 400 PANTHER GUANYLATE KINASE-RELATED 1 340 - -
Lal11g1330 400 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 340 - -
Lal11g1330 400 Coils Coil 271 291 - -
Lal11g1330 400 ProSitePatterns Guanylate kinase-like signature. 168 185 IPR020590 -
Lal11g1330 400 TIGRFAM guanyl_kin: guanylate kinase 134 314 IPR017665 GO:0004385|GO:0006163
Lal11g1330 400 SUPERFAMILY Galactose oxidase, central domain 29 115 IPR011043 -
Lal11g1330 400 Pfam Guanylate kinase 133 314 IPR008145 -
Lal11g1330 400 Gene3D Guanylate Kinase phosphate binding domain 165 224 - -
Lal11g1330 400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 134 314 IPR027417 -
Lal11g1330 400 ProSiteProfiles Guanylate kinase-like domain profile. 133 315 IPR008144 -
Lal11g1330 400 Gene3D - 139 310 IPR027417 -
Lal11g1330 400 SMART gk_7 132 318 IPR008145 -
Lal11g1330 400 Gene3D - 16 138 IPR015915 GO:0005515
Lal11g1330 400 CDD GMPK 135 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1330 Lal-Chr11 16895790 16899134 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1330 K00942 - gmx:100808931 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1330 11 16895790 16899134 Lal11g1330 11 16895790 16899134 ECH
Lal11g1330 11 16895790 16899134 Lal20g0252 20 1797728 1801206 LSH