Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0234 ATGATGCTCAGAATCCGAAGCCGCGACGGTCTCGAACGAATCACAATCGACAACCCAAACATCACTATCTCTCAACTCCAAACCATAATCCAAACCCAACTCCATATCCCAATCCAGAACCAAACCCTCTCTACGAACCAAAACCTCCTCTTATCCAAAACCCACAACGATCTCAACCGTTTCACCGACATGTCAAACCCCAACACTCCCCTCTCCACTCTTAACCTCACCCACGGCTCAATCATCTTCTTAATTTACGACGGCGAAAGGCGAGTTATCGGTCCCGCCACCGCTTTTAGCCCCGCTGGCTCTTTCGGCCGTAAGATGACAATGGATGACCTTATTGCTAAACAGATGCGGGTCTCCCGTCAGGAGACCCCACACTGTGAGTCCGTCTCTTTTGACCGCGATTGCGCCGATGCGTTCCAGCGTTATGTTAATGAAACGCTCGCGTTCGCGGTCAAAAGAGGCGGTTTTATGTATGGGAGGGTTAGTGAGGATGGGAGGGTAGAGGTTGATTTTATATATGAGCCGCCACAACAGGGTTTGGAGGAGAATTTGGTAATTTTTCGGAACCCTGATGAGGAGAAGGTAGTGGAGGCTATTGCTTTAGGGTTAGGGATGAGGAAGGTTGGGTTTATTTTTACTCAGACTGTTAGTCAGGATAAGAAGGATTTTACGATGTCGAATCGGGAGGTTATTCAGGCGGTTGAGTTTCATGCTGAGAGTGGGTTGAAGGAGTGGGTCACTGCTGTGGTGAAATTGGAGGTGAATGAGGAGATGGGTGGTGCTGCTGATGTGCATTTTGAGGCTTTTCAAATGAGTGATGTTTGTGTCAAGTTGTTTAAGGAAGGGTGGTTTGAGACTGAGATTAAGGAAGAGGATGATCCTAAGTTGTCTAAGATGAAGAAAGATGTTGTTGTTGGTGTTAAGGATACTAAGGAGGTTGATAATGATTTCTTCTTGGTTGTTGTCAAAATCCTTGATCATCAGGGTCCTCTGTCATCTACATTTCCCATTGAGAACCGGAATACTCAAGTGACTATGAGGGCACTGAAGAATCATCTTGACCGGACAAAAAGTCTTCCATTTGTGAAGCGAATTTCTGATTTTCATTTGCTACTCGTATTAGCTAGGTTTTTAGACCTGGTTGCTGATGTTCCTGCATTGACAGAATGTGTGCAGACACAGACCGCTATACCTGAAGGTTATCAAATCCTTATCGAGTCCATGGCCGACGCTGCTTGA 1248 0.4615 MMLRIRSRDGLERITIDNPNITISQLQTIIQTQLHIPIQNQTLSTNQNLLLSKTHNDLNRFTDMSNPNTPLSTLNLTHGSIIFLIYDGERRVIGPATAFSPAGSFGRKMTMDDLIAKQMRVSRQETPHCESVSFDRDCADAFQRYVNETLAFAVKRGGFMYGRVSEDGRVEVDFIYEPPQQGLEENLVIFRNPDEEKVVEAIALGLGMRKVGFIFTQTVSQDKKDFTMSNREVIQAVEFHAESGLKEWVTAVVKLEVNEEMGGAADVHFEAFQMSDVCVKLFKEGWFETEIKEEDDPKLSKMKKDVVVGVKDTKEVDNDFFLVVVKILDHQGPLSSTFPIENRNTQVTMRALKNHLDRTKSLPFVKRISDFHLLLVLARFLDLVADVPALTECVQTQTAIPEGYQILIESMADAA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0234 415 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Lal20g0234 415 Pfam NPL4 family 158 230 IPR007717 -
Lal20g0234 415 CDD Ubl_AtNPL4_like 1 85 - -
Lal20g0234 415 Pfam Nuclear pore localisation protein NPL4 1 84 IPR024682 -
Lal20g0234 415 ProSiteProfiles MPN domain profile. 131 278 IPR037518 -
Lal20g0234 415 CDD MPN_NPL4 120 377 IPR007717 -
Lal20g0234 415 Gene3D - 1 100 - -
Lal20g0234 415 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 2 92 IPR016563 GO:0006511
Lal20g0234 415 PANTHER NUCLEAR PROTEIN LOCALIZATION 4 103 412 IPR016563 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0234 Lal-Chr20 1645520 1660068 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0234 K14015 - gmx:100811623 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1309 11 16729105 16732099 Lal20g0234 20 1645520 1660068 LSH