Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0220 ATGCGTAGAACCACAAATATGAGACCTAATATCGTTTCTGAGGCAGGGGTGTCTACTAGGTTGAATCAGTGGTGGGAAAACATTCCATTTCTCACTTCTGCAGTGGTTGTTGTTTGTGGAATTATTTACGTGGTTTGTCTTTTGGTTGGATATGATTCCTTCACAGAGGTTTGCTTCTTGCCCTCTGCTGTTATATCTCGGTTTCAAGTTTACAGGATTTATACCTCCATTATTTTCCATGGTTCTCTGCTTCATGTTTTCTTCAACATGACGGCTTTGATTCCCATGGGATCTGAGCTGGAGAGGATCATGGGGTCAGTTCGCTTGCTATATGTCACTATTTTGTTGGCTACAAGCAATGCAATATTCCATGTTCTCATAGTACTACTGGTGGCACACAATCCTATTCACCCTTATGAGAACCTCATGTATGAGTGTGCAATAGGCTTCTCTGGAGTTCTATTTTCGATGATTGTTATAGAGACAAGCCTGAGTGGAGCTCAATCCAGGAGGTATGCATTCTTTTTGTTGGTAGCGTTCCAGCTTCTCATGCAAAATGTCTCACTACTTGGACACCTTTGTGGCATCTTATCTGGGTTTGCATATACACATGGCTTCTTTAATTTCCTCATACCCAGGACATCATTTTATTCTTCCATCGAATCCTCCTCCTGGCTTTCATCGTGCGTGAGACGTCCCAAATTTATTGTTTGTACTGGCGGAAATCCTTCTGGTTATATCCCTACACATACAAGCGAAAATTCAACATCCAGTGGAATACTTCCGGGAAATATCTGGAGGAGCCTATCATCATTTATGCCTCAAAGGGAAGTGTCTGCTCAGCCAAATGAGGACAGTAGGTTCCCTGGTAGGGGAAGGACCCTGGGTGCTAGTCAAGGTCAAATGGCTTCTCATCTTCATTCAGATTCAAATCTTCATGCTAGACTCTTGGACAATAGCAGTCCCAATCATCCTTTAGATTCATCCTCTCTCAGTACCAACCGACAATTATCAGGAGGAAGGCATTCAGCTGATAATGTACCAACAGCAACTGCAGTTGTTCCACCACCTCAGGGTGCAATTGCTTCAGAAGAAGGGATTAAAAAACTTGTATCAATGGGCTTTGACAGGACGCAGGTGGAAGTGGCACTGGCAGCTGCTGAAGGTGATGTTAATGTTGCAGTGGAAATACTCATGAGTCAACAGGATTAA 1212 0.4323 MRRTTNMRPNIVSEAGVSTRLNQWWENIPFLTSAVVVVCGIIYVVCLLVGYDSFTEVCFLPSAVISRFQVYRIYTSIIFHGSLLHVFFNMTALIPMGSELERIMGSVRLLYVTILLATSNAIFHVLIVLLVAHNPIHPYENLMYECAIGFSGVLFSMIVIETSLSGAQSRRYAFFLLVAFQLLMQNVSLLGHLCGILSGFAYTHGFFNFLIPRTSFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTHTSENSTSSGILPGNIWRSLSSFMPQREVSAQPNEDSRFPGRGRTLGASQGQMASHLHSDSNLHARLLDNSSPNHPLDSSSLSTNRQLSGGRHSADNVPTATAVVPPPQGAIASEEGIKKLVSMGFDRTQVEVALAAAEGDVNVAVEILMSQQD 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0220 403 PANTHER DER1-LIKE PROTEIN, DERLIN 10 402 - -
Lal20g0220 403 MobiDBLite consensus disorder prediction 297 345 - -
Lal20g0220 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 361 401 IPR015940 -
Lal20g0220 403 MobiDBLite consensus disorder prediction 276 357 - -
Lal20g0220 403 PANTHER RHOMBOID-LIKE PROTEIN 15 10 402 - -
Lal20g0220 403 Gene3D - 336 403 - -
Lal20g0220 403 Pfam UBA/TS-N domain 365 398 IPR015940 -
Lal20g0220 403 SMART uba_6 363 400 IPR015940 -
Lal20g0220 403 Pfam Rhomboid family 66 207 IPR022764 GO:0004252|GO:0016021
Lal20g0220 403 CDD UBA_At3g58460_like 364 399 - -
Lal20g0220 403 SUPERFAMILY UBA-like 358 401 IPR009060 GO:0005515
Lal20g0220 403 Gene3D - 22 208 IPR035952 -
Lal20g0220 403 SUPERFAMILY Rhomboid-like 27 205 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0220 Lal-Chr20 1537280 1543156 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0220 - - gmx:100798661 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0220 20 1537280 1543156 Lal20g0220 20 1537280 1543156 ECH
Lal11g1298 11 16660514 16666836 Lal20g0220 20 1537280 1543156 LSH