Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1298 ATGAGACCTGATATCGTTTCCGAGGCAGGGTTGTCTACTAGATTAAATCAGTGGTGGGAAAACATTCCATTCCTCACTTCTGCTGTGGTGGTTGTTTGTGGAATTATTTACTTGGTTTGTCTTTTCGTTGGATATGATTCCTTTGCCGAGGTTTGCTTCTTGCCGTCTGCTGTTATATCTCGGTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTCCATGGTTCACTGCTTCATGTTTTCTTTAACATGATGGCTTTGGTTCCCATGGGCTCTGAGCTGGAGAGGATTATGGGCTCAGTTCGTTTGTTATATGTCACTGTTTTGTTGGCTACAAGCAATGCAATATTCCATGTTCTCATTGCACTGCTGGTGGCGTACAATCCTATTCAACCCTATGAGAACCTCATGAATGAGTGTGCAATAGGCTTCTCTGGAGTTTTATTTTCGATGATTGTTATAGAGACAAGTCTGAGTGGAGTTCAATCCAGGAGTGTGTTTGGATTGTTTAATGTCCCTGCTAAGTGGTATCCATTCCTTTTGTTGGTAGTGTTTCAGCTTCTCATGCAAAACGTCTCACTACTTGGACACCTTTGTGGCATCTTATCTGGGTTTGCATATACATATGGCTTGTTTAATTTCCTCATACCCAGGACATCTTTTTATTCTTCCATTGAATCCTCCTCCTGGCTTTCATCATGCGTGAGACGTCCCAAATTTATTGTTTGCACTGGTGGAAATCCTTCTGGTTATATCCCTACACACACAAGCGAAAATTCAACATCCAGTGGAATACTTCCGGGAAATATTTGGAGAAACCTATCATCTTTTATGCCTCAAAGGGAAGCGCCTGCTCAGCCAAATGAGAACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTGCTGGTCAAGGTCAAACGGCTTCTGATCTTCATTCTGATTCAAACCTTCAAGCTAGACTCTTGGACAATAGCAGTCCCAATCATCCCTTAGATTCACCCACTCTTAGCACTACCCAACAATTATTAGGTGGAAGGCATTCGGCTGATAATGCAGCAACTGCAGTTGTCCCACCTCATCAGGGTGCAGTTGCTTCAGAAGAAGAAATAAAAAAACTTGTATCAATGGGCTTTGATAGGACCCAGGTGGAAGTGGCTCTTGCTGCTGCTGATGGCGATCTTAATGTTGCAGTGGAAATACTCATGAGCCAACAGGATTAA 1221 0.4308 MRPDIVSEAGLSTRLNQWWENIPFLTSAVVVVCGIIYLVCLFVGYDSFAEVCFLPSAVISRFQVYRIYTSILFHGSLLHVFFNMMALVPMGSELERIMGSVRLLYVTVLLATSNAIFHVLIALLVAYNPIQPYENLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYPFLLLVVFQLLMQNVSLLGHLCGILSGFAYTYGLFNFLIPRTSFYSSIESSSWLSSCVRRPKFIVCTGGNPSGYIPTHTSENSTSSGILPGNIWRNLSSFMPQREAPAQPNENSRFPGRGRTLGAGQGQTASDLHSDSNLQARLLDNSSPNHPLDSPTLSTTQQLLGGRHSADNAATAVVPPHQGAVASEEEIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1298 406 Gene3D - 342 406 - -
Lal11g1298 406 SMART DUF1751_2 55 157 - -
Lal11g1298 406 MobiDBLite consensus disorder prediction 281 346 - -
Lal11g1298 406 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 364 404 IPR015940 -
Lal11g1298 406 PANTHER RHOMBOID-LIKE PROTEIN 15 4 405 - -
Lal11g1298 406 SMART uba_6 366 403 IPR015940 -
Lal11g1298 406 Pfam Rhomboid family 60 213 IPR022764 GO:0004252|GO:0016021
Lal11g1298 406 Gene3D - 16 213 IPR035952 -
Lal11g1298 406 SUPERFAMILY Rhomboid-like 19 216 IPR035952 -
Lal11g1298 406 Pfam UBA/TS-N domain 367 401 IPR015940 -
Lal11g1298 406 PANTHER DER1-LIKE PROTEIN, DERLIN 4 405 - -
Lal11g1298 406 MobiDBLite consensus disorder prediction 302 346 - -
Lal11g1298 406 CDD UBA_At3g58460_like 367 402 - -
Lal11g1298 406 SUPERFAMILY UBA-like 342 404 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1298 Lal-Chr11 16660514 16666836 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1298 - - gmx:100798661 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1298 11 16660514 16666836 Lal11g1298 11 16660514 16666836 ECH
Lal11g1298 11 16660514 16666836 Lal20g0220 20 1537280 1543156 LSH