Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0213 ATGAAATTTGAATGTGCATTCAAAGAGTACCTGCAAGAAGAGAGAGAGTGGATGTTGGACAAGAAATGTGCTCATATTGAATATTCAAGGTTAAAGGAAGTGTTGAAGAGTTGCCAGAGCTGTAAGCAATTGCACAATTCTTCTGATTCTGAACTAGATCAACACCACTTATGTCGATGTCAATCTTGCTCATCGCGTGATGAAAAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATATAGTAGGATACTTTAATTCAAGAGCTAGGCAGATCCTTCATCTTCATACTGCAACAGGAATGAAGAGTTATGTATGGCGCTTGAGCCACTGCTTTAAAAATGATATGCAAGCCCTCGAGCAAGAAGGGAGAATTTTAATCGAGTACATTGCAATGAACGCTATAGCGATGAGGAAAATACTTAGGAAATATGATAAGGTACACAACTCTGTGAATGGGGAGAACTTCAAATCGAGGATGCTTGCGGATCACATTGAACTTTTACACTCACCTTGGCTGATTGAATTGGGTGCTTTTTATTTGAACTTTAGCGGGCTAGATGATTGTGAGCTTGATGTAATTTGTGGTCACTTTTCATGTGTTCTAAACATAGCTGAAGCCAAAATGACCTTGAGACTTCCAGATTCTATTAAGCTCGAGTACCATCTAACTTGTGCAATTTGCCTGGATTTGGTTTTCAATCCATATGCTTTGGGTTGTGGTCATATCTTCTGCAAGTCATGTGCTTGCTCAGCTGCTTCTGTGATGATTTTCGAAGGCCTTAAAGCTGCAGGTCGAGAGTCAAAGTGTCCCATATGCAGAGAGGTTGGAGTTTATTCTAAGCCAATGCAAATGTTAGAACTTGATCTGCTTATAAAAAAAAGGTGCAAACATTACTGGAAAGAAAGGCTATCCGACGAACGAGTCGATATGTTGCACCAAAGTAAAGTCTACTGGAATATGCAGTACACACATCCAACTGGATTAATGTAG 993 0.3978 MKFECAFKEYLQEEREWMLDKKCAHIEYSRLKEVLKSCQSCKQLHNSSDSELDQHHLCRCQSCSSRDEKFFSELMKEASDIVGYFNSRARQILHLHTATGMKSYVWRLSHCFKNDMQALEQEGRILIEYIAMNAIAMRKILRKYDKVHNSVNGENFKSRMLADHIELLHSPWLIELGAFYLNFSGLDDCELDVICGHFSCVLNIAEAKMTLRLPDSIKLEYHLTCAICLDLVFNPYALGCGHIFCKSCACSAASVMIFEGLKAAGRESKCPICREVGVYSKPMQMLELDLLIKKRCKHYWKERLSDERVDMLHQSKVYWNMQYTHPTGLM 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0213 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 325 IPR013083 -
Lal20g0213 330 Pfam RING-type zinc-finger 225 249 IPR027370 -
Lal20g0213 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 325 IPR033326 -
Lal20g0213 330 ProSiteProfiles SPX domain profile. 1 158 IPR004331 -
Lal20g0213 330 SMART ring_2 225 273 IPR001841 -
Lal20g0213 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 325 - -
Lal20g0213 330 ProSiteProfiles Zinc finger RING-type profile. 225 274 IPR001841 -
Lal20g0213 330 SUPERFAMILY RING/U-box 217 276 - -
Lal20g0213 330 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0213 Lal-Chr20 1506767 1512243 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0213 K16275 - gmx:100781704 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0213 20 1506767 1512243 Lal20g0213 20 1506767 1512243 ECH
Lal11g1295 11 16631901 16635866 Lal20g0213 20 1506767 1512243 LSH