Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1295 ATGAAATTTGGGTGTGCATTCAAAGAGTATCTAGAAGAAGAGAAGGAGTTGATGTTGGATAAGAAATGTGTTCATATTGAATATTTCAGGTTGAAAAAAGTGTTGAAGAATTGCCAAAGTTGTAAGCATTTGAATACTTGTTCTGATTCTGACCTTGATCAAGACCAGTTATGCCAATGTCAATCTTGCTCATTGTGTGATCAAAAGTTCTTCTCTGAGTTGATGAAGGAAGCATCAGATATAGTAGGATACTTTAATTCAAGAGTTAGACATATCCTTAATCTTCATATTGCAACAGGAATGAAGGGTTATATATTGCGCTTGCGCCAGTGCTTTAAAGACGATAGGCAAGACCTCGCGCAAGAAGGGGGAATTTTAATTGAGTACATTGCAATGAATGCAATAGCAATGAGGAAAATTCTTAAGAAATATGATAAAGTACACAACTCTGTGAATGGGGAAAATTTCAAGTCCAGGATGCATGCTGAGCACATTGAACTTTTACACTCACCTTTTCTGATTGAATTGGGTGCTTTTTATTTGAATTCGAGTGGGCGTGATGGTTTTGAGCTCGATGGAATCCGCGGTCGCTTTTCATGTGATCTAAACATAACTGAAGCTGTAATAACTATGAGCCTTCCAGATTCTATTAAGCTTGAGTACAATCTAACTTGTGCAATCTGTCTGGATTATGTTTTCAATCCTTATGCTTTGGGTTGTGGTCATATCTTCTGTAAGTCATGTGCTTGCTCAGCTGCCTCTGTGATGATTTTCGAAGGCCTTAAATCTGCGATTCCAGAATCGAAGTGTCCCATATGCAGAGAGGTTGGAGTTTATTCTAAGCCAATGCACATGTTAGAACTTGATCTGCTTATAAAAAGAAGGTGCAGAAAATACTGGAAAGAAAGGCTAAGTGTCGAACGAAGCGAAACGATGAAGCAAATCAAAGAATACTGGAATATGCAGAGTACATATGCAACTGGATTGTAG 990 0.3798 MKFGCAFKEYLEEEKELMLDKKCVHIEYFRLKKVLKNCQSCKHLNTCSDSDLDQDQLCQCQSCSLCDQKFFSELMKEASDIVGYFNSRVRHILNLHIATGMKGYILRLRQCFKDDRQDLAQEGGILIEYIAMNAIAMRKILKKYDKVHNSVNGENFKSRMHAEHIELLHSPFLIELGAFYLNSSGRDGFELDGIRGRFSCDLNITEAVITMSLPDSIKLEYNLTCAICLDYVFNPYALGCGHIFCKSCACSAASVMIFEGLKSAIPESKCPICREVGVYSKPMHMLELDLLIKRRCRKYWKERLSVERSETMKQIKEYWNMQSTYATGL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1295 329 ProSiteProfiles Zinc finger RING-type profile. 225 274 IPR001841 -
Lal11g1295 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1-LIKE-RELATED 1 328 - -
Lal11g1295 329 SMART ring_2 225 273 IPR001841 -
Lal11g1295 329 Pfam RING-type zinc-finger 225 249 IPR027370 -
Lal11g1295 329 ProSiteProfiles SPX domain profile. 1 158 IPR004331 -
Lal11g1295 329 SUPERFAMILY RING/U-box 217 276 - -
Lal11g1295 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 326 IPR013083 -
Lal11g1295 329 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 328 IPR033326 -
Lal11g1295 329 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1295 Lal-Chr11 16631901 16635866 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1295 K16275 - gmx:100781704 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1295 11 16631901 16635866 Lal11g1295 11 16631901 16635866 ECH
Lal11g1295 11 16631901 16635866 Lal20g0213 20 1506767 1512243 LSH