Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0206 ATGTATTCTTCTTCTTCTTCTTCCATATATGGTGTCTCTATTTCACTTCTTCTATTCACTCTCTTACCATTTCATTCATCTTCTTCTTCTACAACTCAAATCAATTCTAATTCTATTCTAGTTGCGCTTCTCGATTCTCATTACACTGAACTCGCTGAACTCGTTGAAAAAGCGCTTCTATTACAGAAACTTGAAGATGCTGTTGGAAACCATAATATCACTATCTTTGCACCTAGAAACCAAGCATTGGAACGAAACCTTGACCCTGATTTCAAGCGTTTCTTGCTTGAACCACGAAACCTTAACTCTCTTCAAACGCTTCTCATGTCTCACATTATTCCCACCAGAATCATCGCCGCCCAACACTGGCCAACCGCCGCCGGTACTGCCGAAGTGAGCCACAAGAGTCTCGCCGGTCAGCATCATTTGCATTTGAGGGCGGGTGTTTCCGGTAATAAAACTGTCGACAACGCCGCCGTGCTCCGCCCTGATGACGTTATCAGACCCGACGGCGTCATCCATGGGATTGATCAGTTATTGATTCCTAGATCTGTGCAGGAGGATTTTAACCGCCGTCGTAACCTCCGTTCTATCGCGGCGGTGATACCGGAGGGAGCACCGCAGGTGGATCCTCGAACTAACCGCTTGAAGAAACTAGCTCCAGTACCCGCCGGCGCGCCTCCGATTCTCCCGATCTACAACGCGCTAGCTCCAGGCCCATCAATAGCTCCGGCGCCGGCTCCGGGACCCGGCGGTGCGAGGCACCACTTCAACGGAGAGAGGCAGGTGAAGGATTTCATTCAAACTCTGTTACAGTACGGCGGTTACAACGAGATGGCGGATATTCTGGTGAACCTAACGTCGTTAGCGACGGAGATGGGACGGTTGGTGTCGGAGGGTTACGTTTTAACGGTGTTAGCGCCGAACGATGAAGCGATGGCGAAACTAACAACGGAACAGTTAAGCGAACCAGGGGCACCGGAACAGATAATGTATTATCATATAATTCCGGAGTATCAAACTGAAGAGAGTATGTATAATGCGGTTAGAAGGTTTGGGAAGATTCGATATGATACATTGCGGTTGCCGCATAAGGTGGTGGCTCAGGAGGCTGATGGTTCGGTTAAATTCGGGCACGGTGATGAGTCTGCTTATTTGTTTGATCCTGATATTTATACAGATGGCAGGATTTCTGTGCAGGGGATTGATGGGGTTTTGTTCCCTTTGGAGGAAGAAGAAACTAACACTCACAAAACAACAACAACAACAACAACTCCACTTGTTAAAGTTGCTGCTAAGCCAAGAAGAGGGTTCTTTTCATGTAAAGCTAAACTTTGTGGGGACTGTAGTTGTAGGGCAGACCTCTAA 1368 0.4781 MYSSSSSSIYGVSISLLLFTLLPFHSSSSSTTQINSNSILVALLDSHYTELAELVEKALLLQKLEDAVGNHNITIFAPRNQALERNLDPDFKRFLLEPRNLNSLQTLLMSHIIPTRIIAAQHWPTAAGTAEVSHKSLAGQHHLHLRAGVSGNKTVDNAAVLRPDDVIRPDGVIHGIDQLLIPRSVQEDFNRRRNLRSIAAVIPEGAPQVDPRTNRLKKLAPVPAGAPPILPIYNALAPGPSIAPAPAPGPGGARHHFNGERQVKDFIQTLLQYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKIRYDTLRLPHKVVAQEADGSVKFGHGDESAYLFDPDIYTDGRISVQGIDGVLFPLEEEETNTHKTTTTTTTPLVKVAAKPRRGFFSCKAKLCGDCSCRADL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0206 455 Gene3D FAS1 domain 254 408 IPR036378 -
Lal20g0206 455 SUPERFAMILY FAS1 domain 36 183 IPR036378 -
Lal20g0206 455 SMART fasc_3 74 183 IPR000782 -
Lal20g0206 455 SMART fasc_3 304 409 IPR000782 -
Lal20g0206 455 ProSiteProfiles FAS1/BIgH3 domain profile. 35 180 IPR000782 -
Lal20g0206 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 8 439 IPR044654 -
Lal20g0206 455 ProSiteProfiles FAS1/BIgH3 domain profile. 263 406 IPR000782 -
Lal20g0206 455 Pfam Fasciclin domain 47 182 IPR000782 -
Lal20g0206 455 Pfam Fasciclin domain 288 407 IPR000782 -
Lal20g0206 455 Gene3D FAS1 domain 39 183 IPR036378 -
Lal20g0206 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 8 439 - -
Lal20g0206 455 SUPERFAMILY FAS1 domain 242 409 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0206 Lal-Chr20 1461196 1464724 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0206 - - gmx:100800956 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0206 20 1461196 1464724 Lal20g0206 20 1461196 1464724 ECH
Lal1g1724 1 19670409 19675194 Lal20g0206 20 1461196 1464724 LSH