Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1724 ATGATTTCTTCCATTTTCATTCTCCTATCTCTCTTACCCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCATTATCATCTTCTCAAATCAATTCTAACTCAATCCTTGTTGCACTTCTTGATTCCCATTACACTGAACTTTCTGAACTTGTTGAAAAAGCACTCCTTTTACACAAACTTGAACAAACCGTTGGAACCCATAACATTACTATCTTTGCACCAAGAAACCATGCATTGGAACGTAACCTTGACCCTGAGTTCAAAAGTTTCTTGCTTGAACCAAGAAACCTTAACTCTCTTCAAACGCTTCTCATGTCTCACATTATCCCAACAGCGATTTTCGCTTCACAACGATGGCCTAATGCCGGCACCGCCGTGCGCCATGAAACACTCGCCGGAGATCATGGGGTATATTTGGGGGAGGATAACTCCGGGAACAAAATTGTTGACTCCGCCGCCGTGCTCCGGCCGGATGACGTCATCCGACCTGACGGCGTAATCCACGGGATTGACCAGTTGCTGATTCCGAGATCCGTGCAGGAAGATTTCAACCGCCGACGGAGCCTCCGCGCTATAGCGGCGGTGATACCGGAGGGAGCACCGCAGGTAGATCCTCGAACCAACCGCTTGAAAAAACCAGCTCCAGTCCCCGCCGGCGCGCCTCCGGTTCTTCCGATCTACGAAGCCCTAGCTCCAGGTCCGTCAATCGCTCCGGCGCCGGCTCCAGGACCCGGCGGCGCGAGACGGCACTTCAACGGAGAACGGCAGGTAAGAGATTTCATCCAAACTCTGTTACACTACGGCGGTTACAACGAGATGGCGGATATTCTGGTTAACCTAACGTCGTTAGCGACGGAGATGGGTCAATTGATATCGGAGGGTTACGTTCTAACGGTGTTAGCGCCGAACGACGAAGCTATGGCGAAACTCGCCACGGAACAATTGAGTGAACCGGGTGCACCGGAACAAATCATGTATTATCATATCATTCCGGAGTATCAAACAGAAGAGAGTATGTATAATGCGGTTAGAAGGTTCGGGAAGATTCGATTCGATACGCTTCAGCTGCCGCATAAGGTCGTGGCTCAGGAGGCCGATGGTTCGGTTAAATTCGGGAATGGTGATGGTTCTGCTTATCTGTTTGATCCTGATATTTATACAGATGGGAGAATTTCTGTGCAGGGAATTGATGGAGTTTTGTTCCCTTTGGAGGAAGAAATTGAGGAACAAGAGTCTAAAACTCAGAAGAAAACAACAATTCCACTTGTTAAAGTTGCTGCCAAACCAAGGAGAGGTGAGCGTGGACCGGGTTGA 1314 0.4871 MISSIFILLSLLPFLSSSSSSSSSLSSSQINSNSILVALLDSHYTELSELVEKALLLHKLEQTVGTHNITIFAPRNHALERNLDPEFKSFLLEPRNLNSLQTLLMSHIIPTAIFASQRWPNAGTAVRHETLAGDHGVYLGEDNSGNKIVDSAAVLRPDDVIRPDGVIHGIDQLLIPRSVQEDFNRRRSLRAIAAVIPEGAPQVDPRTNRLKKPAPVPAGAPPVLPIYEALAPGPSIAPAPAPGPGGARRHFNGERQVRDFIQTLLHYGGYNEMADILVNLTSLATEMGQLISEGYVLTVLAPNDEAMAKLATEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKIRFDTLQLPHKVVAQEADGSVKFGNGDGSAYLFDPDIYTDGRISVQGIDGVLFPLEEEIEEQESKTQKKTTIPLVKVAAKPRRGERGPG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1724 437 Gene3D FAS1 domain 252 402 IPR036378 -
Lal1g1724 437 ProSiteProfiles FAS1/BIgH3 domain profile. 257 385 IPR000782 -
Lal1g1724 437 Gene3D FAS1 domain 35 177 IPR036378 -
Lal1g1724 437 ProSiteProfiles FAS1/BIgH3 domain profile. 31 174 IPR000782 -
Lal1g1724 437 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 9 433 - -
Lal1g1724 437 SUPERFAMILY FAS1 domain 236 403 IPR036378 -
Lal1g1724 437 SMART fasc_3 298 403 IPR000782 -
Lal1g1724 437 SMART fasc_3 70 177 IPR000782 -
Lal1g1724 437 SUPERFAMILY FAS1 domain 34 177 IPR036378 -
Lal1g1724 437 MobiDBLite consensus disorder prediction 408 437 - -
Lal1g1724 437 Pfam Fasciclin domain 292 402 IPR000782 -
Lal1g1724 437 Pfam Fasciclin domain 43 176 IPR000782 -
Lal1g1724 437 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 9 433 IPR044654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1724 Lal-Chr1 19670409 19675194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1724 - - jre:109011891 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1724 1 19670409 19675194 Lal1g1724 1 19670409 19675194 ECH
Lal1g1724 1 19670409 19675194 Lal20g0206 20 1461196 1464724 LSH