Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0198 ATGGATCCTTCTAGAACGCCACTTGGACAAATGCTATTGGACGAGATCACTCCCGTTCTAATGCTCCTTTCTACTCCCACCGTAGAAGATTCCTGCCTCAAAAACGGCCTCACTTTTCTTCAAATGCTATCTCCATTTTCCTCTTTCAACAACATCGACGTTCCTGTTAGAACCGCGAGTGATCAGCCTTACCGCATTCACAAGTTCAAATTGCGCTTATTTTACGCTTCCGATGTTAGGAGCCCCGATTTGAAGGGAGCTAAAGAGCATTTGAAACAAGTTATCATGGAAGCAGGGGAGAAAGTGTTCTCTGAGCTCATTTCAGATGAAGAAGAAATTGATCAACATCAACAACTTGACAGTTCTGAATACAGAAATACACCATCATGGTTTCAACTTCTCAATAAAGAGCTTGTCCGTGTGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCCGTGGCATGTCTTATAGCTGTTTCTTCAAAAGATGAACAGCCTATTAACAGATGTGTTGACCTTTTTAATACCAACAAGCTTCCTTTCCTTCTTAATGATGGTGCAATGGATCCAAAGATTTTGAAGCATTACTTGTTAGTGCATGATAATCAAGATGGCCATGCAGACAGAGTAAGTAAAATATTGACAGAAATGAGGAGTACATTTGGTACAAGTAATTGTTTGTTTCTTTGCATTAATTCTACACCGGATGCTCCAATCAAACATGAAGAAAATCCTTGGGCTTCATTTATATCTGATGCTTCACCTAGTAAAGATCTTGGTTTCTTTCTAAACATTGATGATATCAGTGAGATCAAAGATCTAATGCAAGATTTATCGTCTAAACACATCATTCCAAACATGGAGGAAAATGTACGCGTGCTCAATCAACAGGTTACTGCATCGCGAAAAGGTTTTAGAAACCAAATAAAAAACTTATGGTGGAGAAAAGGAAAAGAGGATGGTGAAGATTCTCTCAATGGTCCTATGTATAACTATAACTCCATTGAATCTCAGATTAGAGTTTTAGGTGATTATGCTTTCATGCTACGGGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCACAGATTACAAGATTGATAAAGCCTGGAAACGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTCGGATCAATCAAGAAAGGAAGCTGAGTACTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGGTCGCCGGGTCAGCAAAATGCAACACGATGTGGCTTATGGTGGGTAGAAATGTTGAAAGCATGGGATCAATATAAAGAGGCAGCCACTGTTTATTTTCGTATTTGTGGTGAGGATATCTTACATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTACTTGCTATCTAAACCCTCCCTGTTACGCAAATATGGATTTCATTTAGTGCTCTCTGGTGAGCAGTATAAAAAGTGTGATCAGATCAAACATGCAATTCGAACATACAGAAGTTCTCTTTCTGTTTTTAAAGGAACTACTTGGAGTTATATCCGTGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTGGCTGTCAAGCATATGATGGAGGTCTTGGCCTGTAGTCACCAGTCCAAGTCAACGCAGGAACTATTCGTGGGTGACTTTCTTAAAATTGTTGAGAAAACAGGACAGACATTTGAGGTAACAAAGCTCCAATTGCCTGTGATCAACATCTCTTCGCTCAAGGTCATCTTTGAAGATTATCGGACTTTTGGATCCCCTTTGGCTGCTAATACTAGAGAAAGCTTGTGGCGTTCTTTAGAGGAAGAAATGATTTCATCATTCTCTGCTGCCAAGACAAACTGGTTGGAGTTGCAATCAAAGCTTGTCTCAAGAAAGCACAGTCAATCAAATGTTTGTGTTGCAGGGGAGGCTGTGAATGTGAATATTGAATTCAAAAACCCTCTGCAAATCTCAATCCCCATATCTGGTGTTACACTCATTTGCAAGCATTCTGCTATTACTGAGGAAGTTAGACTAGATGAAAACAAGTCAATTGTGGAGGATGATAATGGCATTGATCACTTCAAAGATATGAGCTCAAACAATTCCTCAATTTTGATGTCCGAGATTGATTTCTTACTAGGAGGTGGTGAAACAACTATGGTTCAACTATCAGTTACTCCCATAGTAGAAGGTACTCTTGAAATTCTCGGTGTTAGGTGGAAACTGTCAGGTACAATAGTTGGCTTTCACAAGTTTGATTTGAGCCTCCCAAAGAATATTGTAAAATCTAGAAGGAAAAGAAAACACTCACCTAATGACAAGTTTAAATTTATGGTCATCAAGAGCATACCCAAACTTCAGGCTTCCATTAATTCGTTACCTGGAAAGGCGTATGCTGGAGATCTACGGCAACTTGTTTTAGAGTTGAAAAACCCATCCAAGTTTCCTGTTAAGAATCTGAAGATGAAGATAAGTCATCCTAGATTCCTTATTATTAGGAATCAGGAAGATATAAAGTCAGAGTTTCCTGCTTGCTTAACAAAGAAGATAAATTCAGGACAAAGTGATGCACATGCCAATCATAGTATCTTGCCTCACACAGTCTTTTTGTTTCCAGAGGGCACTTCAGTTCAAGGTAAAACACCTTTCTTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGAAATTTCCCTTTACTTGAGCATATATTATGAGATGGAAGATATATCGAATATCATCAAATATCGCACCCTGCGCTTGCATTACAATGTGCAGGTATTACCATCACTGGATATCTCCTTTCAAATTAGTCCTTCTCGATTGAGAATACATGAATTCGTTGTTCGATTGGATGTTGTTAACAAGACAAGCTCAGAATGCTTCCAAGTTTATCAGTTATCATCTATTGGGCACCACTGGCAAATTTCATTACTTCAACCTCCTGATACTATTTTTCCTTCACAATCATTGATGGCTGGCCAAGCAATATCATGTTTCTTCACACTAAAGAACTCAAGTAAATTATCAACTTCTGAGGACAACTTGTCTACCATGAATGTCACAACTGATGTGAGATTGGTTCCCCAAAGCAGTGAGTATTTACTTTACGATGTAAATAATGCATCTTTCGTCAAGTTCCACCATTATGAAAGATTGCAGCAGGAATTTATTGCTAGCACGGGCCCTATTTCTTGGCTGCTAGATGGACCTCAAACCTTCCATCATGATTTTTCTGTATCCTTCTGTGAAATAGATCTAAAGATGCGTCTTTACAATTCTTCTGGGGCCACTGTTTTTTTACGGATTGACACCTCAGATTCTGCTGGTATCGGCGGACATACCAACAGTTTTAATGCAGTTCAATCAGCAATCCCTGATACCCAAGCAGGGTGGCATTATGTCCCACCAGTGGATGAACTTAAAGTCACCACATCAAAAGTTCTTGAAACCCAACCAAGTAAGGCACTACCATTAGAAAGTGTTTCCCCATTTGTTTGGTCTGGGTCAAGCTCTACCAATCTCCATCTTGAGCCTATGTCCTCCGTGGAAATCCCTCTTCAGATTTGTGTATTCATTCCTGGGACATATGACCTATCAAATTACACGTTGAGTTGGAAACTTCCATCCAAAGTCCAGGGAGATTCTAACGAAACGAATCTGCGTTCAGGCAAGTGCCAAGGGTATAAACACTATCTTACTGTGCTCCAATCCATTTGA 3744 0.3966 MDPSRTPLGQMLLDEITPVLMLLSTPTVEDSCLKNGLTFLQMLSPFSSFNNIDVPVRTASDQPYRIHKFKLRLFYASDVRSPDLKGAKEHLKQVIMEAGEKVFSELISDEEEIDQHQQLDSSEYRNTPSWFQLLNKELVRVASFSDHEAFDHPVACLIAVSSKDEQPINRCVDLFNTNKLPFLLNDGAMDPKILKHYLLVHDNQDGHADRVSKILTEMRSTFGTSNCLFLCINSTPDAPIKHEENPWASFISDASPSKDLGFFLNIDDISEIKDLMQDLSSKHIIPNMEENVRVLNQQVTASRKGFRNQIKNLWWRKGKEDGEDSLNGPMYNYNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMSDQSRKEAEYCMENAFNTYLKLGSPGQQNATRCGLWWVEMLKAWDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSLLRKYGFHLVLSGEQYKKCDQIKHAIRTYRSSLSVFKGTTWSYIRDHVHFHIGQWYASLGMYDVAVKHMMEVLACSHQSKSTQELFVGDFLKIVEKTGQTFEVTKLQLPVINISSLKVIFEDYRTFGSPLAANTRESLWRSLEEEMISSFSAAKTNWLELQSKLVSRKHSQSNVCVAGEAVNVNIEFKNPLQISIPISGVTLICKHSAITEEVRLDENKSIVEDDNGIDHFKDMSSNNSSILMSEIDFLLGGGETTMVQLSVTPIVEGTLEILGVRWKLSGTIVGFHKFDLSLPKNIVKSRRKRKHSPNDKFKFMVIKSIPKLQASINSLPGKAYAGDLRQLVLELKNPSKFPVKNLKMKISHPRFLIIRNQEDIKSEFPACLTKKINSGQSDAHANHSILPHTVFLFPEGTSVQGKTPFLWPLWFRAAVPGEISLYLSIYYEMEDISNIIKYRTLRLHYNVQVLPSLDISFQISPSRLRIHEFVVRLDVVNKTSSECFQVYQLSSIGHHWQISLLQPPDTIFPSQSLMAGQAISCFFTLKNSSKLSTSEDNLSTMNVTTDVRLVPQSSEYLLYDVNNASFVKFHHYERLQQEFIASTGPISWLLDGPQTFHHDFSVSFCEIDLKMRLYNSSGATVFLRIDTSDSAGIGGHTNSFNAVQSAIPDTQAGWHYVPPVDELKVTTSKVLETQPSKALPLESVSPFVWSGSSSTNLHLEPMSSVEIPLQICVFIPGTYDLSNYTLSWKLPSKVQGDSNETNLRSGKCQGYKHYLTVLQSI 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0198 1247 SUPERFAMILY TPR-like 397 551 IPR011990 GO:0005515
Lal20g0198 1247 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 640 830 IPR013935 -
Lal20g0198 1247 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 189 520 IPR024420 -
Lal20g0198 1247 PANTHER TRANSPORT PROTEIN TRAPP 8 1246 IPR024420 -
Lal20g0198 1247 Gene3D Tetratricopeptide repeat domain 331 555 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0198 Lal-Chr20 1388300 1401973 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0198 K20305 - gmx:100809666 2028.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1730 1 19725504 19744935 Lal20g0198 20 1388300 1401973 LSH