Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1730 ATGACGATAGATCCTTCGAAAACGCCACTTGGCCAAATGCTATTGGACGAAATCACTCCGGTTGTCATGCTCCTTTCTACTCCCGCCGTAGAAGATTCCTCCCTCAAAAACGGCCTCACCTTTCTTCAAATCCTTTCTCCTTTCTCTTCCTTCAACAACATCGATGTTCCTGTTAGAACCGCTAGTGATCAACCTTATCGGATTCACAAGTTCAAATTTCGGTTATTTTATGCTTCTGATGTTAGGAACCCTGATTTGAAGGTAGCTAAAGAGCGTGTGAAACGAGTTATTACGGAAGCTGGGGAGAAAGTGTTCACCGAGCTCACTTCAGATGCACCAGAAATTGATGAACATCAAAAACTTGACAGTTCTGAATACATAAATACACCATCATGGTTTCAGTTTCTCAATAAAGAGCTTGTCCGTGTGGCTTCCTTTTCAGACCATGAAGCTTTTGACCATCCTGTGGCATGTCTTCTAGCTGTCTCTTCAAAGGATGAAAAGCCCATTAACAGATTTGTTGATCTTTTTAATAGCAACAAGCTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAGATTTTGAATCTGTACTTGTTAGTGCACGATAATCAAGATGGGTCTGTAGACAGAGCAAGTAGAATATTGACAGAAATGAGGAGCACATTTGGTACAAGTAACTGCTTCTTGCTTTGCATTAATTCTTCACCAGATGCTCCAATCAAACATGAAGAAAATCCTTGGGCTTCATATATATCTGATGCCTCACCTAGTCAAGATCACGGTTGCCTTCTTAACATTGATGATATCAATGAGATCAAAGATATATTGCAAAATTTATCATCCAAGCATATCATTCCAAACATGGAGCAAAAGATACGCGTGCTCAATCAACAGGTTTCTGCAACACGAAAAGGTTTTAGAAACCAAATAAAAAACTTATGGTGGAGAAAAGGAAAAGAAGATGGTGCAGATTCTCTCAATGGTCCTATGTATAACTATAACTCCATTGAATCCCAGATTAGAGTTTTGGGTGATTATGCTTTCATGCTACGAGATTATGAACTTGCCTTGTCAAATTATCGCCTAATTTCCACAGATTACAAGATTGATAAAGCCTGGAAACGTTATGCTGGTGTACAGGAAATGATGGGACTTGCGTACTTCATGTCGGATCAATCAAGAAAGGAAGCTGAGTATTGCATGGAACATGCTTTTAACACATATTTAAAACTAGGATCCCCGGGTCAGCAAAATGCAACACGATGTGGTCTATGGTGGATAGAAATGTTGAAGGCACGAGATCAATATAAAGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCTTACATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTACTTGCTATCTAAACCCTCCATGTTGCGCAAATATGGATTTCATCTAGTGCTCTCTGGTGAGCAGTATAAAAAGTGTGATCAGGTCAAACATGCAATTCGAACATACAGAAGTGCTCTTTCTGTTTTTAAAGGAACTACTTGGAGTTATATTGGTGATCATGTTCATTTCCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTGGCTATCAAGCATATGCTGGAGATCTTGGCCTGTAGTCACCAGTCCAAGTCAACTCAGGAATTATTCCTGGGTGACTTTCTTCAAATTGTTGAGAAAGCAGGACAGACATTTGAGGTAACAAAGCTTCAATTGCCTGTGATCAACATCTCTTCACTCAAGGTCATCTTTGAAGATTACCGGACTTTTGGATCCCCTTCATCTGCTAATACTAGTGAAGGCTTATGGCGTTCTTTGGAGGAAGAAATGATTCAATCATTCTCTGCTGCCAAGACAAACTGGTTGGAGTTGCAATCAAAGCTTGTCTCAAGGAAGCACAGTCAATCAAATGTTTGTGTTGCAGGGGAGGCTGTGAAGGTGAACATTGAATTCAAAAACCCTCTGCAAATCTCAATCCCCATATCTGGTGTTAGACTCATTTGCAAGCATTCCGCTATTACTGATGAAGGTAGACTAGATGAAAACAAGTCAAGTTTGGAGGATGAAAATGATGTTGATCACTTCAAGGATACGAATTTAGATAATTCCTCATTTTTGGTGTCTGAGGCTGATTTCTTACTAGGAGGTGGTGAAAAAACTCTGGTTCAACTATCAGTTACTCCCAGGGTAGAAGGTACTCTTGAAATTCTTGGTGTTAGGTGGAAACTGTCTGGTACTATAGTTGGCTTTCACAAGTTTGAGTTGAGCCTCCCAAAGAATACTGTAAAAGCTAGAAGGAAAGGAAAGCTCTCACCTAATGACAAGTTTAAGTTTATGGTCATTAAGAGCATACCCAAACTTCAGGCTTCCATTAATTTGTTACCTGGAAAGGCATATGCTGGAGATTTAAGGCAACTTGTTTTAGAGTTGAAGAACCCATCCGAGTTTCCTGTCAAGAATCTGAAGATGAAGGTAAGTGATCCTAGATTCCTTATTATTGGGAATCAGGGAGATATGAAGTCAGACTTTCCTGCTTGCTTAACAAAGAAGACAGATTCATCAGTACAAAGTGACTCACATGCCAATAATAGTATCTTGTCTGACACAGTCTTTCTGTTTCCAGAGGGCACTTCAGTGCAAGGTGAAACACCTTTCCTGTGGCCTCTTTGGTTTAGGGCTGCTGTTCCAGGTGAAATTTCCCTTTACTTGAGCATATATTATGAGATGGAAGATATATCGAGTGTCATCAAATATCGCACCCTTCGCTTGCATTACAACGTGCAGGTATTACCATCATTGGATGTCTCATTTCAAATTAGTCCTTCTCGATTGAGAATACAAGAATTCCTTGTTCGATTGGATGTTGCTAACAAGACAAGCTCGGAATGTTTCCAAGTTTATCAATTGTCATCTATTGGGCAAAACTGGCAAATCTCATTACTTCAACCCCCAGATACTATTTTTCCTTCACAATCATTGATGGCTGGTCAAGCAGTATCTTGTTTCTTCACACTAAAGAAATCAAGTACATTACTGACTTTTGAGGACAACATATCTACCATGTCTCTCACAAGTGATGTAAGATTGGTTCCCCAAAGCAATGAGGATTTAGTTTACAATGTAAACAGTGCACCTTTGGTCAATTTCCACCATTATGAAAGATTGCAGCAGGAATTGTCACACGAGGTTGACTTAAATGCTGTTGATTTTGTATTGATCTCTCGACCACTCAAGAGTAACACTAATCTTGGTTTTTCTGATTCTCCTCATGTTATGTCACATCATGCGAGTTACTCCAGTACTGCTAGCACAGGCCCTATTTCATGGCTGCTAGATGGACCTCAAACCTTGCATCATGATTTCTCTGAATCATTCTGTGAAATAGATCTGAAGATGCATCTTTACAATTCTTCTGTTGCCACTGCTTTTGTGTGCATTGACACCTCAGATTCTGCTGGTATTAGCAGACATACCATTCAATCAGCAACTCCTGATAACCAAGCAGGGTGGCATGATGTCCCACCTGTGAATGAACTTAAAGTCACCACATCAAATGCTCTTGAAACCCAACCAGGAAAGGCACTATCATTGGAAGGTGTTTCCCCGTACATTTGGTCTGGGTCAGGCTCTACCAATCTCCACATTGAGCCTATGTCCTCCGTGGAAATTCCTCTTCAGATATGTGTGTTCTCTCCTGGGACATATGACCTATCAAATTATACTTTGAGTTGGAATCTTCCATCCAAAGGTCGGGGAGATTCTAACGAGACGAAACAGCCTTCAGGCAAGTGCCAGGGGTACAAATACTATCTCACTGTGCTCCAATCCGCTTGA 3861 0.4043 MTIDPSKTPLGQMLLDEITPVVMLLSTPAVEDSSLKNGLTFLQILSPFSSFNNIDVPVRTASDQPYRIHKFKFRLFYASDVRNPDLKVAKERVKRVITEAGEKVFTELTSDAPEIDEHQKLDSSEYINTPSWFQFLNKELVRVASFSDHEAFDHPVACLLAVSSKDEKPINRFVDLFNSNKLPSLLNDGAMDPKILNLYLLVHDNQDGSVDRASRILTEMRSTFGTSNCFLLCINSSPDAPIKHEENPWASYISDASPSQDHGCLLNIDDINEIKDILQNLSSKHIIPNMEQKIRVLNQQVSATRKGFRNQIKNLWWRKGKEDGADSLNGPMYNYNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLAYFMSDQSRKEAEYCMEHAFNTYLKLGSPGQQNATRCGLWWIEMLKARDQYKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHLVLSGEQYKKCDQVKHAIRTYRSALSVFKGTTWSYIGDHVHFHIGQWYASLGMYDVAIKHMLEILACSHQSKSTQELFLGDFLQIVEKAGQTFEVTKLQLPVINISSLKVIFEDYRTFGSPSSANTSEGLWRSLEEEMIQSFSAAKTNWLELQSKLVSRKHSQSNVCVAGEAVKVNIEFKNPLQISIPISGVRLICKHSAITDEGRLDENKSSLEDENDVDHFKDTNLDNSSFLVSEADFLLGGGEKTLVQLSVTPRVEGTLEILGVRWKLSGTIVGFHKFELSLPKNTVKARRKGKLSPNDKFKFMVIKSIPKLQASINLLPGKAYAGDLRQLVLELKNPSEFPVKNLKMKVSDPRFLIIGNQGDMKSDFPACLTKKTDSSVQSDSHANNSILSDTVFLFPEGTSVQGETPFLWPLWFRAAVPGEISLYLSIYYEMEDISSVIKYRTLRLHYNVQVLPSLDVSFQISPSRLRIQEFLVRLDVANKTSSECFQVYQLSSIGQNWQISLLQPPDTIFPSQSLMAGQAVSCFFTLKKSSTLLTFEDNISTMSLTSDVRLVPQSNEDLVYNVNSAPLVNFHHYERLQQELSHEVDLNAVDFVLISRPLKSNTNLGFSDSPHVMSHHASYSSTASTGPISWLLDGPQTLHHDFSESFCEIDLKMHLYNSSVATAFVCIDTSDSAGISRHTIQSATPDNQAGWHDVPPVNELKVTTSNALETQPGKALSLEGVSPYIWSGSGSTNLHIEPMSSVEIPLQICVFSPGTYDLSNYTLSWNLPSKGRGDSNETKQPSGKCQGYKYYLTVLQSA 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1730 1286 Gene3D Tetratricopeptide repeat domain 332 558 IPR011990 GO:0005515
Lal1g1730 1286 SUPERFAMILY TPR-like 345 554 IPR011990 GO:0005515
Lal1g1730 1286 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 173 522 IPR024420 -
Lal1g1730 1286 PANTHER TRANSPORT PROTEIN TRAPP 10 1285 IPR024420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1730 Lal-Chr1 19725504 19744935 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1730 K20305 - gmx:100813062 2126.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1730 1 19725504 19744935 Lal20g0198 20 1388300 1401973 LSH