Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0188 ATGTGCATTCATTTATGCTGTTCTAACTTCTCTTCTATCACCAATTCTCAACACATGGAACACAGAGCAAGTTTTCCAATGGCTTATCCTCACATTATTCTCTGCTTCTTCTGTCTCTTCTCAATCATTTCATCTTCTTCATCTACTAACCCCAACTCAATTACTCTTCCTCTTTCTCCTTTATTCACCAACCACCCTTCATCATCACCAGATCCATTCCAATCCCTCAAACTCGCCGCCTCTGCGTCTCTAACACGCGCCAACCACCTCAAATATAGAACCAAAACCAATCTCAACGACCCTTCAAATGTCACTACAGAAGTTCATTCCAAAAGCTACGGTGGTTATTCAATAGATCTTCAATTTGGAACACCAACTCAAACCTCGTCTTTTGTCTTAGACACTGGAAGTAGCCTTGTTTGGTTCCCATGTTCCTCACGTTATACATGTTCCTCTTGTTCCTTCTCCAATATTGATCCAACCACAATCCCTAAGTTCATTCCAAAAAACTCAACATCTTCGAAAATCGTTGGGTGTACTAACCCAAAATGTGGTTGGATTTTTGGGTCTAATGTTGAATCTCGTTGCAATGGTTGCAACCCAGAGACTCAAAATTGTACCTTTAATTGTCCTACCTATATAATTCAATATGGGTTGGGTTCAACCGCGGGTTTATTACTCTCCGAGAATCTCAATTTTCCGGGGAAAGTCGTGCCGGATTTTCTAGTTGGTTGTTCTCTTCTCTCGATTCGGCAACCTTCTGGGATTGCCGGTTTTGGACGCGGTTTAGAATCGCTTCCGTCTCAAATGGGGTTGAAGAGATTCTCTTACTGTTTAGTTTCTCATAAGTTCGATGATTCGCCGGAGAATAGTGACCTCATTTTGCAGATAGCTTCCTCCGGCGACGGAAAAACCAGTGGGTTGAGCTACACGCCGTTTCAGAAAAACCCTGAAGTAAATTCCGTGTTCAAAGAGTATTATTACGTGAGCCTTAAGAAAATCATGGTGGGTGGAAAGCGGGTCAAGATTCCGAGCGGGTTGTTGGAACCGGGTTCTGACGGTAACGGTGGAACCATCGTGGATTCGGGTTCAACATTTACGTTTATGGAGAAGCCAGTTTTTGAATTGGTGGCTCAAGAGTTTGAGAAACAAATGGGAAATAACACAAGAGCTAAGGATGTTGAAACTCAATCTGGTTTGAGTCCTTGTTTTACAGTTCATAACTCCGGCGGCGTTGTTGATTTGCCTCAATTAACTTTCGGGTTCAGGGGTGGTGCTAAAATGGTATTGCCGGTGGCGAATTATTTCTCATTTGTCGACAGTGATAATGTGGTTTGTTTGACTATTGTTTCCGATGGTGTTGTCGGTCCGGCGAGGGGTAGTGGTCCGGCGATCATCTTGGGGAACTATCAACAACAAAACTTTTATGTAGAATTTGATTTGGAAAATGAGAGATTTGGATTTGGGCATCGAAATTGTAACAAAATTACTTAA 1494 0.4244 MCIHLCCSNFSSITNSQHMEHRASFPMAYPHIILCFFCLFSIISSSSSTNPNSITLPLSPLFTNHPSSSPDPFQSLKLAASASLTRANHLKYRTKTNLNDPSNVTTEVHSKSYGGYSIDLQFGTPTQTSSFVLDTGSSLVWFPCSSRYTCSSCSFSNIDPTTIPKFIPKNSTSSKIVGCTNPKCGWIFGSNVESRCNGCNPETQNCTFNCPTYIIQYGLGSTAGLLLSENLNFPGKVVPDFLVGCSLLSIRQPSGIAGFGRGLESLPSQMGLKRFSYCLVSHKFDDSPENSDLILQIASSGDGKTSGLSYTPFQKNPEVNSVFKEYYYVSLKKIMVGGKRVKIPSGLLEPGSDGNGGTIVDSGSTFTFMEKPVFELVAQEFEKQMGNNTRAKDVETQSGLSPCFTVHNSGGVVDLPQLTFGFRGGAKMVLPVANYFSFVDSDNVVCLTIVSDGVVGPARGSGPAIILGNYQQQNFYVEFDLENERFGFGHRNCNKIT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0188 497 Gene3D Acid Proteases 92 288 IPR021109 -
Lal20g0188 497 PANTHER OS07G0603500 PROTEIN-RELATED 31 493 - -
Lal20g0188 497 SUPERFAMILY Acid proteases 112 494 IPR021109 -
Lal20g0188 497 Pfam Xylanase inhibitor C-terminal 327 489 IPR032799 -
Lal20g0188 497 Pfam Xylanase inhibitor N-terminal 116 285 IPR032861 -
Lal20g0188 497 PANTHER BNACNNG47670D PROTEIN 31 493 - -
Lal20g0188 497 ProSiteProfiles Peptidase family A1 domain profile. 116 489 IPR033121 -
Lal20g0188 497 Gene3D Acid Proteases 296 497 IPR021109 -
Lal20g0188 497 CDD pepsin_A_like_plant 115 493 IPR034161 -
Lal20g0188 497 PRINTS Pepsin (A1) aspartic protease family signature 122 142 IPR001461 GO:0004190|GO:0006508
Lal20g0188 497 PRINTS Pepsin (A1) aspartic protease family signature 358 369 IPR001461 GO:0004190|GO:0006508
Lal20g0188 497 PRINTS Pepsin (A1) aspartic protease family signature 465 480 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0188 Lal-Chr20 1307204 1308697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0188 114 496 Miscellaneous Gene Families AT1G44130 24.396 8.32e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0188 - - gmx:100805927 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0188 20 1307204 1308697 Lal20g0188 20 1307204 1308697 ECH
Lal11g1264 11 16310481 16311878 Lal20g0188 20 1307204 1308697 LSH