Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0170 ATGGCTTCCAAGGCGATAGCGACGGCGGTGGAGAAATTCGGCACGGCGGCGCGGCGTCATGCGGTGATGTTAACGGACGCTGCGGCTTCGCGAATACGAGAGTTGCTAGATCAGCGTCAGAGACCCTTCTTGAAGCTCGGAGTCAAGGCTCGCGGTTGTAACGGCTTATCCTACACTCTTAATTACGCAGATGAAAAGGGGAAATTTGATGAGTTAATTGAGGATAAGGGTGTCAAGATATTGATTGATCCAAAGGCTCTTATGCATGTCATTGGGACTAAGATGGATTTTGTAGATGACAAACTGAGATCCGAGTTCATTTTTGTTAATCCAAACTCTAAAGGCCAGTGTGGTTGTGGTGAATCTTTCATGACCACATCCAGTAGTGGAGCTGCTAAGTCATGA 405 0.4741 MASKAIATAVEKFGTAARRHAVMLTDAAASRIRELLDQRQRPFLKLGVKARGCNGLSYTLNYADEKGKFDELIEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFVNPNSKGQCGCGESFMTTSSSGAAKS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0170 134 Pfam Iron-sulphur cluster biosynthesis 23 121 IPR000361 -
Lal20g0170 134 Gene3D - 21 127 IPR035903 -
Lal20g0170 134 ProSitePatterns Hypothetical hesB/yadR/yfhF family signature. 106 123 IPR017870 -
Lal20g0170 134 TIGRFAM TIGR00049: iron-sulfur cluster assembly accessory protein 22 124 IPR016092 GO:0016226|GO:0051536
Lal20g0170 134 SUPERFAMILY HesB-like domain 22 114 IPR035903 -
Lal20g0170 134 PANTHER IRON-SULFUR CLUSTER ASSEMBLY PROTEIN 3 133 - -
Lal20g0170 134 PANTHER IRON-SULFUR ASSEMBLY PROTEIN ISCA-LIKE 3, MITOCHONDRIAL 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0170 Lal-Chr20 1171912 1174868 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0170 K22063 - gmx:100777750 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0170 20 1171912 1174868 Lal20g0170 20 1171912 1174868 ECH
Lal11g1233 11 16110202 16113133 Lal20g0170 20 1171912 1174868 LSH