Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0166 ATGGGTGCTCATATGCGTGTTCCAGGAATCATTTCCTTGCTCCTTCTAATTTCTTGGTTATTCGAATTCCATGTTGCTTATTCCTACACTTTCCCACCTCTTGGTAACAAAATCATCACTCCACAGAACAATGATATTGATCCTTCAGCCCCACAACAGAATATTGGATGGTTATTTCAGGTACGTATCAATCAAGTGGGGCAGGATAGAATGAGAATATCATGGTTTACACTTTATCCAACACGTGCAACAGTTCAATATGGTCTAACCCCTACGGCTGATAGCTTCAATGCTACTGGAGTAACTGATTCATATCGTTATCTTTTATATTACTCTGGGCCAATTCACAATGTGGTAATAGGTCCACTCAACTCTAATGAAATCTACTATTATCGTTTGGGTAACTCTACGAAAGTATACACTATGAAGACTCCACCCTCTCAATTTCCTATCAAGTTTGCAACTGTTGGAGATCTTGGACAAATAGAGTACACCAAAACAACTTTGGAGTATATATCCAACTCAACCTATGACATGTTACTATTAGCTGGGGACTTATCCTATGTAAATACCATTCAAGAACAATGGGAATCATTTGGCCGTCTAATTGAACCATTTGCAAGTCAGAGACCGTGGATGGTAACAACAGGGGACCATGATGTTGAGAAGATTTATATTCTTCATAGAAGGTCATTCACAGCTTACAATACAAGGTGGGTAATGCCGTTTGAAGAGAGTGGATCAAACTCTAACCAATACTATTCTTTTGAGGTGGCTGGTGTTCATGTTATTATGTTAGGATCATACACAGATTTTGACAGTAAGTCTGATCAATATAAATGGCTTCAAGGGGACTTGAATAAGTTGGATAGGGGAAAAACTCCTTGGGTTGTGGTGATGTTTCATGCCCCCTGGTATAACTCCAACAGTCTTCATCGGGGTGAATATGAATCAGTTGAAATGAAGGCTAGTATGGAAGATTTGCTCTATAAAGCTCGTGTTGATCTTGTTATTTCAACGCATATTCATGCCTATGAGCGTTTTACAAGACTTTATAATGGAAATGCTGACATGTGTGGTCCAGTGTATATCACTATTGGTGATGGAGGCAACAATGATAACTATAATCCATACTTTGCAGACCCCCCGCCAGATATATCATTATTCAGGGAGCGTAGCTATGGACATGGGACATTAGAGGTGGCTAATACAACACATGCACTTTGGACTTGGATTAGGAATAATGATGATAAACCAGTTATTAGTGAGTCTCTATGGTTCACAACCCTCTCATCAGATTCTGCTTGTAAAGCTTCATATTTATGA 1326 0.3914 MGAHMRVPGIISLLLLISWLFEFHVAYSYTFPPLGNKIITPQNNDIDPSAPQQNIGWLFQVRINQVGQDRMRISWFTLYPTRATVQYGLTPTADSFNATGVTDSYRYLLYYSGPIHNVVIGPLNSNEIYYYRLGNSTKVYTMKTPPSQFPIKFATVGDLGQIEYTKTTLEYISNSTYDMLLLAGDLSYVNTIQEQWESFGRLIEPFASQRPWMVTTGDHDVEKIYILHRRSFTAYNTRWVMPFEESGSNSNQYYSFEVAGVHVIMLGSYTDFDSKSDQYKWLQGDLNKLDRGKTPWVVVMFHAPWYNSNSLHRGEYESVEMKASMEDLLYKARVDLVISTHIHAYERFTRLYNGNADMCGPVYITIGDGGNNDNYNPYFADPPPDISLFRERSYGHGTLEVANTTHALWTWIRNNDDKPVISESLWFTTLSSDSACKASYL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0166 441 PANTHER PURPLE ACID PHOSPHATASE 14 437 - -
Lal20g0166 441 SUPERFAMILY Purple acid phosphatase, N-terminal domain 52 146 IPR008963 GO:0003993|GO:0046872
Lal20g0166 441 CDD MPP_PAPs 147 428 IPR041792 -
Lal20g0166 441 PANTHER ACID PHOSPHATASE RELATED 14 437 IPR039331 GO:0003993
Lal20g0166 441 Pfam Iron/zinc purple acid phosphatase-like protein C 360 417 IPR025733 -
Lal20g0166 441 Gene3D - 148 436 IPR029052 -
Lal20g0166 441 SUPERFAMILY Metallo-dependent phosphatases 150 423 IPR029052 -
Lal20g0166 441 Pfam Calcineurin-like phosphoesterase 152 345 IPR004843 GO:0016787
Lal20g0166 441 Pfam Purple acid Phosphatase, N-terminal domain 60 144 IPR015914 GO:0003993|GO:0046872
Lal20g0166 441 Gene3D - 59 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0166 Lal-Chr20 1140784 1150250 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0166 113 418 Miscellaneous Gene Families AT1G13900 26.446 6.12e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0166 K22390 - gmx:100794764 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0166 20 1140784 1150250 Lal20g0166 20 1140784 1150250 ECH
Lal11g1220 11 15928796 15933137 Lal20g0166 20 1140784 1150250 LSH