Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0144 ATGGTTTACACCATTTCTGGTATTCGATTCCCTGTTGTTCCTTCTTCGGTTCATAAACCTTCGCAATCGAGCTTCCATGGCGATCGAAGCATGACTTCATCTCTCTCATTCTTTCTCAACAACAACTACTCCTTCTCCCGGAAAACCCTTGCCGTAAAAGTTTCCCATGATTCTGACTCCACATCTTCCACAATTGCTGAATATGATGAAGTACTTGTTCCTGAAGACCAAGATAACTCTTCGTCCTTGACAGATCAACTTGAAACTCCTGACATAACCTCAGAGGATACAGAGACGACATCAGTATCAGTAGACAGAAAATTAAAAATGCAAATTGATGAAGTGAAACCAAAGATCATTCCCCCACCTGGCACTGGGAAGAAAATATATGAGATTGATCCATTTTTGCAACCTCACCGTGAACATCTTGATTTCCGTTATGCACAATACAAAAGACTGCGTGCGGAAATTGACAAGTATGAAGGTGGTCTGGATGCATTTTCTCGTGGTTATGAAAAATTTGGCTTCACACGCAGTTCTAAAGGCATTACTTATAGAGAGTGGGCACCCGGAGCTAAGACAGTAGCATTAATCGGAGACTTCAATGGTTGGAATCCAAATGTAGATGAAATGATTCGGAATGAGTTTGGTGTATGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCGCCAGCAATTCCTCATGGTTCTCGAGTCAAGATTCGTATGACTACTCCCTCTGGAATCAAGGACTCAATTCCTGCTTGGATCAAGTTCTCTGTACAGGCTCCTGGTGAAATTCCATATAATGGAATATACTATGATCCACCAGAAGAGGAACAATATGTCTTCAAATATTCGCAGCCAAAGAGACCAAAATCACTTAGAATATATGAGTCACATGTTGGAATGAGTAGTCCTGAGCCAAAAATCAACACATATGCCAATTTTAGAGATGATGTACTACCTCGTATTAAAAGGCTTGGCTATAATGCTGTCCAGATTATGGCCATCCAAGAACATTCGTATTATGCTAGCTTTGGATACCATGTTACAAATTTCTTTGCCCCTAGCAGCCGATTTGGAACTCCAGACGAACTTAAGTCTCTAATTGACAGAGCTCATGAACTAGGTCTGCTTGTTCTGATGGATATTGTACATAGCCATGCATCAAGTAATACATTGGATGGGCTGAATTTGTTTGATGGAACTGATGGCCATTACTTCCATCCTGGGTCACGTGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAGTACTAAGGTATTTACTTTCAAATGCAAGATGGTGGCTGGATGAATACAAGTTTGATGGGTTTAGATTTGATGGTGTCACATCAATGATGTACACTCATCATGGATTGGAGGTAACTTTTACTGGAAATTACAACGAGTATTTTGGTTTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGGTTAATGATCTCATTCATGGACTCTTCCCTGAGGCTGTTACAATTGGTGAAGATGTCAGTGGAATTCCGGCATTCTGCATTCCTACACAAGATGGTGGAATTGGCTTCGATTATCGCCTGCACATGGCCATTGCCGACAAGTGGATTGAGCTCCTCAAGAAGCAAGATGAAGACTGGAGAATGGGTGATATAATCCACACACTCACAAACAGAAGGTGGCAGGAAAAATGTGTAGCTTATGCTGAAAGTCATGATCAAGCATTAGTTGGTGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGAGTTCATGGCTTTAGACAGACCATCTACTCCTCTTATAGATCGTGGAATAGCATTACACAAAATGATTAGGCTTATCACCATGGGTCTCGGTGGTGAAGGGTATTTGAATTTTATGGGAAATGAATTCGGCCATCCTGAGTGGATTGACTTTCCAAGGGGTGATCAACATCTTCCTAATGGCTCAGTAATTCCTGGGAATAATAACAGTTATGATAAATGCAGGCGTAGATTTGACTTGGGGGATGCAAAATATCTAAGATATCGGGGGATGCAGGAATTTGATCAAGCCATGCAGCACCTAGAAGAAAGCGTTAATTTCATGACTTCTGAGCAGCAATATATTTCACGGAAAGATGAAGGTGACAGAGTTATAGTCTTTGAAAGAGGCAACCTTGTATTTGTCTTCAACTTTCATTGGACCAACAGCTATTCAGATTACAGAATTGGCTGCTTATACCCAGGGAAATATAAGATTGTCTTGGATTCAGATGATGCTATGTTTGGTGGTTTCAATAGGCTCGATCACACTGCTGAGTACTTCACCTCCGACGGATGGTATGATGACCGACCACGATCCTTTCTTGTGTATGCACCTTCTAGAACAGCAGTGGTTTACGCCCTAGCTGATAAAGTTGAACCAGTGCCAGCTAAACCCTGA 2451 0.4149 MVYTISGIRFPVVPSSVHKPSQSSFHGDRSMTSSLSFFLNNNYSFSRKTLAVKVSHDSDSTSSTIAEYDEVLVPEDQDNSSSLTDQLETPDITSEDTETTSVSVDRKLKMQIDEVKPKIIPPPGTGKKIYEIDPFLQPHREHLDFRYAQYKRLRAEIDKYEGGLDAFSRGYEKFGFTRSSKGITYREWAPGAKTVALIGDFNGWNPNVDEMIRNEFGVWEIFLPNNVDGSPAIPHGSRVKIRMTTPSGIKDSIPAWIKFSVQAPGEIPYNGIYYDPPEEEQYVFKYSQPKRPKSLRIYESHVGMSSPEPKINTYANFRDDVLPRIKRLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDELKSLIDRAHELGLLVLMDIVHSHASSNTLDGLNLFDGTDGHYFHPGSRGYHWMWDSRLFNYGSWEVLRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLEVTFTGNYNEYFGFATDVDAVVYLMLVNDLIHGLFPEAVTIGEDVSGIPAFCIPTQDGGIGFDYRLHMAIADKWIELLKKQDEDWRMGDIIHTLTNRRWQEKCVAYAESHDQALVGDKTIAFWLMDKDMYEFMALDRPSTPLIDRGIALHKMIRLITMGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGSVIPGNNNSYDKCRRRFDLGDAKYLRYRGMQEFDQAMQHLEESVNFMTSEQQYISRKDEGDRVIVFERGNLVFVFNFHWTNSYSDYRIGCLYPGKYKIVLDSDDAMFGGFNRLDHTAEYFTSDGWYDDRPRSFLVYAPSRTAVVYALADKVEPVPAKP 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0144 816 Gene3D - 707 811 IPR013780 -
Lal20g0144 816 SMART aamy 312 672 IPR006047 GO:0005975
Lal20g0144 816 SUPERFAMILY Glycosyl hydrolase domain 708 806 - -
Lal20g0144 816 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 2-1, CHLOROPLASTIC/AMYLOPLASTIC 114 808 - -
Lal20g0144 816 Gene3D Glycosidases 133 701 - -
Lal20g0144 816 Pfam Alpha amylase, C-terminal all-beta domain 711 804 IPR006048 GO:0003824|GO:0005975|GO:0043169
Lal20g0144 816 Gene3D Immunoglobulins 169 281 IPR013783 -
Lal20g0144 816 Coils Coil 688 708 - -
Lal20g0144 816 CDD AmyAc_bac_euk_BE 278 693 - -
Lal20g0144 816 CDD E_set_GBE_euk_N 180 274 - -
Lal20g0144 816 PIRSF GlgB 42 813 IPR037439 GO:0003844|GO:0005978
Lal20g0144 816 MobiDBLite consensus disorder prediction 75 99 - -
Lal20g0144 816 PANTHER 1,4-ALPHA-GLUCAN-BRANCHING ENZYME 114 808 IPR037439 GO:0003844|GO:0005978
Lal20g0144 816 SUPERFAMILY E set domains 167 276 IPR014756 -
Lal20g0144 816 SUPERFAMILY (Trans)glycosidases 287 700 IPR017853 -
Lal20g0144 816 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 173 256 IPR004193 GO:0004553|GO:0005975
Lal20g0144 816 Pfam Alpha amylase, catalytic domain 322 393 IPR006047 GO:0005975
Lal20g0144 816 MobiDBLite consensus disorder prediction 65 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0144 Lal-Chr20 949280 963636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0144 20 807 Glycoside Hydrolase AT5G03650 79.014 0.0 1305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0144 K00700 - gmx:100785968 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0144 20 949280 963636 Lal20g0144 20 949280 963636 ECH
Lal11g1210 11 15840793 15868080 Lal20g0144 20 949280 963636 LSH