Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0090 ATGGATGCCAAGGCATTCAAAATCTACATATTTACTGGGTCTATAGCGAGACGTGTGTTCTTTCGCTTGATCATGCTTGTTTCTGCTGTTTCCATCGTTTCATTGCTCCGAGCAATGTCAAGTTTTGATCTTGCATCATTGGCACCCTTTAATGACTGCCTTGCCGATTCGAATTCACAATTCGAAAACGTTACTTTGAGCCCGAGTTCTTACTTGTTTCAAAGCAGGGTGCTTAGCACCTTTTGGGGTTCATTTGATTCGATGAATTGCGCGAAAGATGCAAACTTGACTGTGAGTGTGGTGAATGAGTTAATGGGCAAGCAACTTTTGAATTATGGAGCAAAAAGCTTATACATTGGAGAAGGGTCTTCAATGGCCATCATGGCAATGAAACAGTTAGGATTCTCCAGTGTTAGTGGTGTTCATAGACACAACCTTTTCTCCCTCATGCAAAAGAATATAGTGTATGAGCTTGATTACAAGGATGATTCATTTGATTTTGTGGTATCTAGGGACCTTGACAAGGTTTCAGTTCCTGCATTACTTGTACTTGAGGTTGAAAGAATCCTTAAGCCTGGTGGAATTGGTGCACTTCTTGTTGGTTCCACTGGTTCCAACTCCAATGATTTGATAAGATCTGCTACACCAGTTTCTTCACTGCTCAGATTTTCTAGTGTTGTGCATGTTGGTCATGTTGATCAACTTAACCTTGTTGTGTTCAAGAAAAGAGCTGAAAATGCAAGTGCCTTCTACCAGTATAGCATTCCAGAAGATTGTCCAAGTCTCAGTTTGACCAACCCCCTCATAGAGCTTATGGAGCCTCTTGTGAGTGAAAGACCAACAACTCCTGAGTATGAGAAAAGTGTTCCTTATTTGCCTAAGTTTGTGGATGTTTCTGCTAAGAAGAGGCTTGTGTATATTGATATTGGGGTAGGAGAACTTCTCAATGCAAATGTTAGTGATTGGTTTATTCCATCTTATCCCATTGATCAGAAGAAATTCAATGCATACTTTGTTCACTATAACACTTCAATCTTGTTGTCCTATGTGAAGAGACCTGGTATAACATTTGTTTATCACCCTGGATTGGCTGGTAAGGTCAATGAGAGGCTCCATGATCCTGATGAAGAAGACATGGATCCATATGAGGGGGAGGATGAGTTTGATTTCCTTGCTTGGTTCCAAGAAACTGTGCATTATGCTGATTTTGTGGTTCTGAAAATGAATGCAGGGAAAGTTGAACTCAAGTTCCTTAAAGATGTATTTGAGAGTGGAAATATATGTTCTGTAGATGAGTTGTTTCTGAGGTGCCCTGAGAGTGGAGGTAATGATGATGATAAAAATATGACCAGCAAAAGCTGCATGGATATCTACAAGGGTCTTAGAAGCAATGAAGTTAGTGGGATTATGATGGATGCCATAGGAACAAATTTTAAAGTGAACAGACCAATATTTATAAGGACCATGATTTTCGGATACCATAACAACAAATCTTGA 1497 0.3981 MDAKAFKIYIFTGSIARRVFFRLIMLVSAVSIVSLLRAMSSFDLASLAPFNDCLADSNSQFENVTLSPSSYLFQSRVLSTFWGSFDSMNCAKDANLTVSVVNELMGKQLLNYGAKSLYIGEGSSMAIMAMKQLGFSSVSGVHRHNLFSLMQKNIVYELDYKDDSFDFVVSRDLDKVSVPALLVLEVERILKPGGIGALLVGSTGSNSNDLIRSATPVSSLLRFSSVVHVGHVDQLNLVVFKKRAENASAFYQYSIPEDCPSLSLTNPLIELMEPLVSERPTTPEYEKSVPYLPKFVDVSAKKRLVYIDIGVGELLNANVSDWFIPSYPIDQKKFNAYFVHYNTSILLSYVKRPGITFVYHPGLAGKVNERLHDPDEEDMDPYEGEDEFDFLAWFQETVHYADFVVLKMNAGKVELKFLKDVFESGNICSVDELFLRCPESGGNDDDKNMTSKSCMDIYKGLRSNEVSGIMMDAIGTNFKVNRPIFIRTMIFGYHNNKS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0090 498 Pfam Methyltransferase domain 155 195 IPR013216 GO:0008168
Lal20g0090 498 PANTHER UPSTREAM ORF PROTEIN, PUTATIVE-RELATED 1 466 - -
Lal20g0090 498 Gene3D Vaccinia Virus protein VP39 132 227 IPR029063 -
Lal20g0090 498 PANTHER PEPTIDE UPSTREAM PROTEIN 1 466 - -
Lal20g0090 498 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 206 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0090 Lal-Chr20 571789 573659 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0090 - - gmx:100783651 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1817 1 20536428 20538107 Lal20g0090 20 571789 573659 LSH