Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0089 ATGACGACGGTCACGAATAGTAGCGGTTCCAATGGTGTTATGACTCCGGCGTCTTCTACGGCGGCGGGGACAGCTCAGTCTCCGGCGGGGTTGAAAACGCATTTCAAAACCCCCGAAGGAAGGTATAAGCTTCAATACGAGAAGAGTCATCCTTCTCTTCTTCATTATGCTCATGGAAAAACCGTTACTCAGGTAACTCTAGCACATCTCAAGGACAAGCCAGCACCATCAACTCCAACTGCATCGTCATCTTCAAGTTTTAGCACCAGCAGTGGGGTACGGTCAGCAGCAGCTAGGTTGTTGGGAGGAAGCAATGGAAGCCGAGCACTTAGTTTTGTTGGAGTCAATGGTAGCAGCAGCAAGAGCAATGGAGGAAGCACTAGGAATGGTTCAACGGCGGCCTCAACTTCAAGTAGTTCAATGGCAAATCTGAATTTTGATGGAAAAGGAACCTACTTGATCTTCAATGTCGGAGATGCAATTTTCATCAGTGACTTGAACTCTCATGATAAGGACCCCATAAAGTCTATTAACTTCGGTAACTCAAATCCTGTATGCCATGCATTTGATCAAGATGCTAAGGATGGCCATGATTTGCTCATTGGCTTGAGCTCTGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGCAAAAAGCTTGTTGGAGCCCAGCATTACAACAAAGATGGTTCTGTCAATACCAGGCAGGATTCAGTCCTTGTGATATTTTCTCGATGTAGTTGTGTCGCTTGGGTGCCAGGAGGTGATGGTGCATTTGTTGTTGCTCATGCTGATGGGAATTTGTACAACAAAGATGGTGCTGGTGATTCTTCGTTTCCGGTTATCAAAGATCAAACTCAGTTTTCTGTTTCCCATTCACGCTATAGTAAGAGTAATCCAGTAGCCAGATGGCATATATGCCAGGGCTCAATTAACAGTATTTCATTCTCAAACGATGGGGCATACTTGGCAACGGTTGGAAGAGATGGTTACTTACGAGTGTTTGATTACTCAAAAGAAATCCTTGTATGTGGTGGAAAAAGTTATTATGGGGCTTTGTTGTGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACTGGAGGAGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCGTGGGGTGAGGGACATAATTCATGGGTAAGTGGAGTGGCTTTTGATTCGTACTGGACATCGCCAAATTCTGGTGACAATGGAGAAACCATTATGTATCGCTTTGGCTCCGTTGGTCAGGATACGCAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTTGTGCCCTTGCGGCGTCCCCCTGGTGGGTCCCCAACTTACAGTACCGGAAGCCAGTCATCCCACTGGGACAATGTTGTACCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGTGATGTTCCAAAAGTCTCTCCATTGGTTACTCACCGTGTGCATACCGATCCACTCTCTGGCTTAATATTCACCCAGGAATCTATACTTACTGCATGCAGGGAGGGTCACATAAAAGTCTGGGTGAGACCGGACATTGTCGAGAGCCAATCAAGCAACTCTGAAACCTTGTTAGCTACCAGCCTCAAGGAGAAGCCTTCACTGTCAAGCAAGATCACCAATTCTAGCTACAAATGA 1680 0.4589 MTTVTNSSGSNGVMTPASSTAAGTAQSPAGLKTHFKTPEGRYKLQYEKSHPSLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSSFSTSSGVRSAAARLLGGSNGSRALSFVGVNGSSSKSNGGSTRNGSTAASTSSSSMANLNFDGKGTYLIFNVGDAIFISDLNSHDKDPIKSINFGNSNPVCHAFDQDAKDGHDLLIGLSSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNTRQDSVLVIFSRCSCVAWVPGGDGAFVVAHADGNLYNKDGAGDSSFPVIKDQTQFSVSHSRYSKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDYSKEILVCGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWTSPNSGDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKVSPLVTHRVHTDPLSGLIFTQESILTACREGHIKVWVRPDIVESQSSNSETLLATSLKEKPSLSSKITNSSYK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0089 559 PANTHER WD REPEAT PROTEIN 5 557 - -
Lal20g0089 559 Gene3D - 21 531 IPR015943 GO:0005515
Lal20g0089 559 MobiDBLite consensus disorder prediction 1 31 - -
Lal20g0089 559 SMART WD40_4 486 523 IPR001680 GO:0005515
Lal20g0089 559 SMART WD40_4 341 382 IPR001680 GO:0005515
Lal20g0089 559 SMART WD40_4 301 340 IPR001680 GO:0005515
Lal20g0089 559 SMART WD40_4 385 437 IPR001680 GO:0005515
Lal20g0089 559 SMART WD40_4 240 274 IPR001680 GO:0005515
Lal20g0089 559 MobiDBLite consensus disorder prediction 1 32 - -
Lal20g0089 559 SUPERFAMILY WD40 repeat-like 177 522 IPR036322 GO:0005515
Lal20g0089 559 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 391 IPR001680 GO:0005515
Lal20g0089 559 MobiDBLite consensus disorder prediction 116 139 - -
Lal20g0089 559 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 5 557 - -
Lal20g0089 559 Pfam WD domain, G-beta repeat 357 382 IPR001680 GO:0005515
Lal20g0089 559 Pfam WD domain, G-beta repeat 312 340 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0089 Lal-Chr20 563747 568928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0089 317 444 Miscellaneous Gene Families AT5G08390 22.656 1.13e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0089 K24741 - gmx:100782580 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0089 20 563747 568928 Lal20g0089 20 563747 568928 ECH
Lal11g1156 11 15243278 15248148 Lal20g0089 20 563747 568928 LSH
Lal1g1819 1 20549721 20555056 Lal20g0089 20 563747 568928 LSH