Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0068 ATGATGAAGAAACAATTGACAGGTATACGGAATGATTCTCCCCTACACTCGGCAATCCGATCTGGAAATTTAGAATTGGCGTTGGAAATTATATCTGGAAAGGAAGATGAAGAAATAAAGAAGTTGCTTTCAAAGCAAAATAACTCTGGTGAAACTGCTTTATATGTTGCTGCTGAAAATGGTCATCTTGATATAGTGAAAGAATTGATCAGATACCATGATGTTGTGTTGGCCAGCATCAAAGCTAGAAATGGATTTGATGCATTCCACATTGCTGCTAAAAATGGGGAGTTAGAGATATTGAAGATCCTCATGGAGGCCATTCCTGAAGTTTCAATGACTGTTGATCAGTCAAACACTACTGCATTGCACACTGCTGCAGCACAAGGACATATTGAAATAGTAAATTTTCTCTTGGAAAAAGGTAGCAGCCTTGTAACTATTGCAAAAAGCAATGGAAAAACTGTCTTGCATTCTGCTTCAAGAAATGGCCATGTGGATGTCATCAAAGCCCTTCTGATTAGAGAACCTGAAATTGCAACGAGAATTGATAAGAAGGGACAGACAGCACTTCATATGGCAGTTAAAGGACAAAATCTTGAGATGGTGGATGAGCTTGTGAAGTTGAATCCATCTTCGGCTAATATTGTGGATGCCAAGGGGAATACTGCACTGCATGTAGCATCCAGGAAAGGTCGTCTACAGATTGTTCAAAAGCTACTAGATTGCAGAGGAATAGACACAGATGTTATTAATAAATCTGGAGAGACAGCTCTAGATACCGCAGAGAAAAATGGTCGCTCGGACATTGCAAGGTTTCTGGTAGCTAATGGAGCTCAAAGCGCAAAGTCCATCAAATCGCCTACTTCAAACCCAGCCCTTGAACTCAAACGGACGGTAAGCGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACACAGAGACGTATGCAAGGCATAGCGAAACGACTCAACAAAATGCAGGGTGGAGGGCTTAACAATGCAATCAACTCCAGCACTATTGTTGCTGTCCTCATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCAGGTCAGTATCCAAATGACCAAACAAAACTCGCCCCTGAAATGTCTCGGGGGGAAGCAAATGTTGCTCCAAATATTGGGTTCAAGATATTCATAATCTTCGACTCTAGTGCCCTCTTCATATCACTGGCTGTTGTGCTTGTGCAAACATCAGTGGTTGTTATTGAGAGGAAAGCGAAGAAGCAGATGACGGCGGTTATAAACAAGTTAATGTGGCTGGCCTGTGTGTTAATTTCTGTGGCATTTCTTGCAATGTCATACATAGTTGTGGGGGATCAGAAATGGTTGGCTATAACAGCAACAGTTATAGGAACAGTGATTATGGCAGCTACTCTAGGAACACTATTTTATTGGGTGATTGCTCACAGACTTGAGGCCTCCAGATTGAGGAGTCTTAGGACAACAATGAGCAGTAGGCAGTCATTAACCATGTCAATGATGTCAGGTTCGGAAACTGAGCATACGACAGTGTATGCAATATAA 1566 0.4163 MMKKQLTGIRNDSPLHSAIRSGNLELALEIISGKEDEEIKKLLSKQNNSGETALYVAAENGHLDIVKELIRYHDVVLASIKARNGFDAFHIAAKNGELEILKILMEAIPEVSMTVDQSNTTALHTAAAQGHIEIVNFLLEKGSSLVTIAKSNGKTVLHSASRNGHVDVIKALLIREPEIATRIDKKGQTALHMAVKGQNLEMVDELVKLNPSSANIVDAKGNTALHVASRKGRLQIVQKLLDCRGIDTDVINKSGETALDTAEKNGRSDIARFLVANGAQSAKSIKSPTSNPALELKRTVSDIKSGVHNQLEHTIKTQRRMQGIAKRLNKMQGGGLNNAINSSTIVAVLIATVAFAAIFNVPGQYPNDQTKLAPEMSRGEANVAPNIGFKIFIIFDSSALFISLAVVLVQTSVVVIERKAKKQMTAVINKLMWLACVLISVAFLAMSYIVVGDQKWLAITATVIGTVIMAATLGTLFYWVIAHRLEASRLRSLRTTMSSRQSLTMSMMSGSETEHTTVYAI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Lal20g0068 521 Pfam Ankyrin repeats (3 copies) 84 145 IPR002110 GO:0005515
Lal20g0068 521 Pfam Ankyrin repeats (3 copies) 215 280 IPR002110 GO:0005515
Lal20g0068 521 Pfam Ankyrin repeats (3 copies) 11 74 IPR002110 GO:0005515
Lal20g0068 521 Pfam Ankyrin repeats (3 copies) 152 209 IPR002110 GO:0005515
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 254 280 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 173 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 254 280 IPR002110 GO:0005515
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 49 71 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 49 71 IPR002110 GO:0005515
Lal20g0068 521 Pfam Domain of unknown function 336 450 IPR026961 -
Lal20g0068 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 220 253 IPR002110 GO:0005515
Lal20g0068 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Lal20g0068 521 Gene3D - 146 322 IPR036770 -
Lal20g0068 521 SMART ANK_2a 10 39 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 186 216 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 49 78 IPR002110 GO:0005515
Lal20g0068 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Lal20g0068 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Lal20g0068 521 Gene3D - 1 145 IPR036770 -
Lal20g0068 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0068 Lal-Chr20 454640 458580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0068 2 494 Miscellaneous Gene Families AT1G07710 67.206 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0068 - - gmx:100787392 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1841 1 20681857 20684883 Lal20g0068 20 454640 458580 LSH