Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1841 ATGCCCTTGGCTTGGACACTGTCCTTGCCTTTAATGGATCATTACAACCCTACGTCCGAACCCACCACCCCTACCACCCCAAGACCTTCCCTTATTCTCTCTACCTCCGCCAAGGCCCTCCTTGTTTCCAACTCCAACAAATCCTTCTTCCTATCTAACTCCGGCAAGCGGTTAGATAGCAAGAAGAAATATGTCAAACAGGTTACTGGTCGACATAATGATACCGAGCTTCACCTCGCCGCACAACGCGGCGACGTGGGCTCGCTCAAACAAATCCTCGCTGAGATCGATGACCAAATGATGGGCACGCTCAGCGGGGCTGAGTTTGATGCCGAGGTCGCAGACATTAGGTCTGCGATCGTTAATGAGGTTAATGAGTTGGGTGAGACCGCTTTGTTTACCGCTGCCGAAAAGGGTCACCTTGATGTTGTTAACGAACTTTTGCCTTATAGCACTAAAAAAGCACTTTCCTTTAAAAACCGGTCCGGTTTTGATCCCTTTCATATTGCGGCTAATAAGGGTCATCAAGAAATTGTGCAGGTGCTACTAGACCATGATCCACAACTAATCAAGACATTTGCACAATCAAATGCAACCCCTCTTATATCAGCAGCCACAAGAGGTCATGCAAATGTAGTTGAACTATTGCTATCACAAGATCCTAGTCAATTGGAAATATCAAGGTCTAATGGAAAAAATGCACTTCATTTAGCTGCAAGACAAGGACATGTTGATGTTGTCAAAATATTGCTAGGGAGAGATCCGCAACTTGCTCGAAGAACCGATAAGAAGGGACAAACTGCGCTTCATATGGCTGTTAAGGGAACAAGCTGTGATGTTGTGAGGCAGCTTCTTAATGCAGATTCTGCAATTGTTATGCTGCCAGATAAGTTTGGGAATACTGCATTGCATGTTGCTACCAGAAAGAAAAGGGCAGAGATAGTGAATGAGTTGGTACTTCTTCCTGACACAAATGTTAATGCCTTAACAAGAGAGCATAAAACAGCTCTTGACCTTGCTGAAGGACTACCAATAAGTGAAGAAATTTTGGAGATCAAAGAGTGCCTCATTCGTCACGGCGGAGTAAAAGCAAATGATCTCAACCAACCAAGAGATGAGCTAAGGAAAACAATGACACAGATAAAAAGAGATGTCTATTACCAACTCGAACAAACCCGAAAAACGAACAAAAATGTGACAGGAATAGCGGAAGAGCTAAAGAAGTTACACAGAGCAGGAATCAACAATGCTACAAACTCGGTAACCGTGGTTGCTGTTCTATTTGCAACAGTTGCATTTGCTGCACTTTTCACAGTCCCTGGTGGTGATGATGATGATGGAAAAGCTGTGATGGTTCACACTGTTTCATTCAAAATGTTCTTTCTCTCTAATGCCATTGCACTCTTTGTTTCATTGGCTGTTGTTGTGGTTCAAATCACACTTGTTAGAGGGGAGACAAAATCTGAGAGAAGGGTTGTTGAGGTTATTAATAAGATGATGTGGTTAGCTTCAGTTTGTACCTCAATTTCATTCATCGCAGCGTCTTATATAATCGTCGGTCGGCGAAGTCTTTGGGCTGCAATACTTGTTACTGTTGTAGGGAGTGTTATAATGGCTACTATTCTTGGTACTATGACATATTATGTGGTTAAATCCAAACGTTATAGAAGAGTGAGGAAGAAGGAGAAGCTGTCAAGGCATGGATCACAGTACTCGTGGCGTAATTCCGATTCCGAATCGACAGAAGTAAATCCAATTTATGCTATTTGA 1770 0.4305 MPLAWTLSLPLMDHYNPTSEPTTPTTPRPSLILSTSAKALLVSNSNKSFFLSNSGKRLDSKKKYVKQVTGRHNDTELHLAAQRGDVGSLKQILAEIDDQMMGTLSGAEFDAEVADIRSAIVNEVNELGETALFTAAEKGHLDVVNELLPYSTKKALSFKNRSGFDPFHIAANKGHQEIVQVLLDHDPQLIKTFAQSNATPLISAATRGHANVVELLLSQDPSQLEISRSNGKNALHLAARQGHVDVVKILLGRDPQLARRTDKKGQTALHMAVKGTSCDVVRQLLNADSAIVMLPDKFGNTALHVATRKKRAEIVNELVLLPDTNVNALTREHKTALDLAEGLPISEEILEIKECLIRHGGVKANDLNQPRDELRKTMTQIKRDVYYQLEQTRKTNKNVTGIAEELKKLHRAGINNATNSVTVVAVLFATVAFAALFTVPGGDDDDGKAVMVHTVSFKMFFLSNAIALFVSLAVVVVQITLVRGETKSERRVVEVINKMMWLASVCTSISFIAASYIIVGRRSLWAAILVTVVGSVIMATILGTMTYYVVKSKRYRRVRKKEKLSRHGSQYSWRNSDSESTEVNPIYAI 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1841 589 Gene3D - 223 381 IPR036770 -
Lal1g1841 589 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Lal1g1841 589 ProSiteProfiles Ankyrin repeat region circular profile. 230 251 - -
Lal1g1841 589 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 40 586 - -
Lal1g1841 589 ProSiteProfiles Ankyrin repeat region circular profile. 162 185 - -
Lal1g1841 589 PANTHER CASKIN 40 586 - -
Lal1g1841 589 Pfam Ankyrin repeats (3 copies) 77 186 IPR002110 GO:0005515
Lal1g1841 589 Pfam Ankyrin repeats (3 copies) 262 326 IPR002110 GO:0005515
Lal1g1841 589 Pfam Ankyrin repeats (3 copies) 196 253 IPR002110 GO:0005515
Lal1g1841 589 ProSiteProfiles Ankyrin repeat profile. 230 262 IPR002110 GO:0005515
Lal1g1841 589 ProSiteProfiles Ankyrin repeat region circular profile. 264 291 - -
Lal1g1841 589 Pfam Domain of unknown function 414 517 IPR026961 -
Lal1g1841 589 SUPERFAMILY Ankyrin repeat 77 359 IPR036770 -
Lal1g1841 589 SMART ANK_2a 127 156 IPR002110 GO:0005515
Lal1g1841 589 SMART ANK_2a 298 328 IPR002110 GO:0005515
Lal1g1841 589 SMART ANK_2a 230 259 IPR002110 GO:0005515
Lal1g1841 589 SMART ANK_2a 196 225 IPR002110 GO:0005515
Lal1g1841 589 SMART ANK_2a 264 293 IPR002110 GO:0005515
Lal1g1841 589 SMART ANK_2a 72 101 IPR002110 GO:0005515
Lal1g1841 589 SMART ANK_2a 162 191 IPR002110 GO:0005515
Lal1g1841 589 Gene3D - 39 222 IPR036770 -
Lal1g1841 589 ProSiteProfiles Ankyrin repeat profile. 162 185 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1841 Lal-Chr1 20681857 20684883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1841 19 589 Miscellaneous Gene Families AT3G09550 72.619 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1841 - - gmx:100801840 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1841 1 20681857 20684883 Lal1g1841 1 20681857 20684883 ECH
Lal1g1841 1 20681857 20684883 Lal20g0068 20 454640 458580 LSH