Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0064 ATGACCACCACCATCTCCGTTCCAATTTCAGCCCCTTCTCGCCGTTCTAACAACTCCTCCGTCAATCTCCGTCATCTATTTTCTACTTCTCATTCCACTTTCGCCACGCTTCAACGTCACTTTCAATTCCCTCGTTCTCGCATCACTGTTTCTTCTTCAATGAGCATTGACGCTCCTGTCATAACCTCTTCCTCTTCCTTCCTGGACCGCAGAGACACTCCGTTTCTTCACTTCGCTAAGTTTCACGGCCTCGGAAACGACTTCGTTTTGGTTGATAATAGAGACATTATTGAGCCCAAGATAAGTCCTGAGAAAGCTGTTCAACTATGTGACCGTAACTTTGGTGTTGGTGCTGATGGGGTTATCTTTGTCTTGCCTGGTATCAATGGCACTGACTATACTATGAGGATTTTTAATTCAGATGGTAGTGAGCCTGAGATGTGTGGCAATGGAGTCAGATGTTTTGCCAAATTTGTTTCTCAGCTTGAGAATTTACATGGGAGGCATAGTTTTACCGTCCATACTGGTGCTGGGCTAATTGTTCCTGAAGTTCTTGAGGATGGAAATGTTAGAGTGGATATGGGGGAACCAATTCTTAAAGCATCAGATGTGCCTACTAAGTTGCCTCCAAATAAGGATCATGCTGTTGTTAAATCGGAGCTAGATGTAGACGGAATTATCTGGAACGTGACTTGTGTTAGCATGGGAAATCCACATTGTATAACTTTCAGTGGAAAAGGATTTGAGAATTTGTTTGTTGATGAGTTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTTCCGGCACGAACAAACACAGAGTTTGTGCAAGTTCTGTCTGAGTCTCACCTAAAGATGCGTGTTTGGGAGCGTGGAGCAGGAGCAACTCTAGCCTGCGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAAGGTCGTGCTGGGAGGAACTGCACGGTTGATCTACCTGGAGGGCCTTTGCAGATTGAGTGGAGGGAGGAAGATAATCATGTCTATATGACAGGCTCAGCAGAACTAGTTTATTACGGATCTTTGCCCCTTTAA 1083 0.4478 MTTTISVPISAPSRRSNNSSVNLRHLFSTSHSTFATLQRHFQFPRSRITVSSSMSIDAPVITSSSSFLDRRDTPFLHFAKFHGLGNDFVLVDNRDIIEPKISPEKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLENLHGRHSFTVHTGAGLIVPEVLEDGNVRVDMGEPILKASDVPTKLPPNKDHAVVKSELDVDGIIWNVTCVSMGNPHCITFSGKGFENLFVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSESHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWREEDNHVYMTGSAELVYYGSLPL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0064 360 Pfam Diaminopimelate epimerase 78 198 IPR001653 GO:0008837|GO:0009089
Lal20g0064 360 Pfam Diaminopimelate epimerase 232 353 IPR001653 GO:0008837|GO:0009089
Lal20g0064 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 35 359 - -
Lal20g0064 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 61 199 - -
Lal20g0064 360 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 200 350 - -
Lal20g0064 360 Hamap Diaminopimelate epimerase [dapF]. 76 360 IPR001653 GO:0008837|GO:0009089
Lal20g0064 360 SUPERFAMILY Diaminopimelate epimerase-like 220 358 - -
Lal20g0064 360 SUPERFAMILY Diaminopimelate epimerase-like 76 205 - -
Lal20g0064 360 TIGRFAM DapF: diaminopimelate epimerase 77 358 IPR001653 GO:0008837|GO:0009089
Lal20g0064 360 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 35 359 IPR001653 GO:0008837|GO:0009089
Lal20g0064 360 ProSitePatterns Diaminopimelate epimerase signature. 139 153 IPR018510 GO:0005737|GO:0008837|GO:0009089
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0064 Lal-Chr20 425409 431531 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0064 K01778 - gmx:100784731 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1126 11 14998615 15003292 Lal20g0064 20 425409 431531 LSH