Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1126 ATGGCGACAATAACCGCCACTATTACCGTTTCTCTCACAACCCCAACTCGCCGCTCTCTCACCAACTCCGTTAATCTCCGTTATCTACTTTTCAATTCCCATTCCAAATTCGCCACGCTCCAACGCAGTTTCAAATCCCATAAAACTCGCATCGCCGTTTCTTCTTCCCTGAGCATTGACGTTCCCGTCAAAACTGCCCCTCCTTCTTTCCTCGACAGAATAGACACAACCTTTCTCCACTTCGCTAAGTATCACGGCCTCGGAAACGACTTCGTTTTGATTGATAATAGAGACATTATTGAGCCCAAGATAAGTCCTGAGAAAGCTGTTCAGCTATGTGACCGAAACTTTGGCGTTGGTGCTGATGGAGTTATTTTTGTATTGCCTGGTTTCAATGGCACTGACTATACCATGAGGATTTTTAACTCAGATGGTAGTGAACCTGAGATGTGTGGCAATGGAGTAAGATGTTTTGTCAAATTTGTTTGTCAGCTTGAGAACTTACATGGAAGGCATAGTTTTACCATACATACTGGTGCTGGGTTGATTGTTCCTGAAATTCTTGAGGATGGAAATGTTAGAGTTGATATGGGAGAACCAATTCTTAAAGCATCAGATGTGCCTACTAAGTTACCTCCAAATAAGGATCACGCTGTTGTTAAATCAGAGCTAGATGTAGATGGAATTATGTGGAATGTTACTTGTGTTAGCATGGGAAATCCACATTGTGTAACTTTCAGTGGAAAAGGATTTGAGAATTTGTTTGTCGATGAGTTGAAGCTAGCAGAAATTGGCCCAAATTTTGAACATCATGAGATGTTCCCAGCACGAACAAACACAGAGTTTGTGCAAGTTCTGTCTGATTCTCACCTAAAAATACGTGTTTGGGAGCGTGGAGCAGGAGAAACTCTAGCCTGTGGAACTGGAGCTTGTGCTACTGTTGTTGCAGCAGTTCTTGAGGGTTGTGCTGAGAGGAATTGCACGGTTGATCTACCTGGAGGGCCTCTGCAGATTGAGTGGAGGGAGAAAGATAACCATGTCTATATGACAGGCTCAGCAGAACTAGTTTATTATGGATCTTTGCCCCTTTGA 1092 0.4322 MATITATITVSLTTPTRRSLTNSVNLRYLLFNSHSKFATLQRSFKSHKTRIAVSSSLSIDVPVKTAPPSFLDRIDTTFLHFAKYHGLGNDFVLIDNRDIIEPKISPEKAVQLCDRNFGVGADGVIFVLPGFNGTDYTMRIFNSDGSEPEMCGNGVRCFVKFVCQLENLHGRHSFTIHTGAGLIVPEILEDGNVRVDMGEPILKASDVPTKLPPNKDHAVVKSELDVDGIMWNVTCVSMGNPHCVTFSGKGFENLFVDELKLAEIGPNFEHHEMFPARTNTEFVQVLSDSHLKIRVWERGAGETLACGTGACATVVAAVLEGCAERNCTVDLPGGPLQIEWREKDNHVYMTGSAELVYYGSLPL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1126 363 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 35 362 IPR001653 GO:0008837|GO:0009089
Lal11g1126 363 Hamap Diaminopimelate epimerase [dapF]. 79 363 IPR001653 GO:0008837|GO:0009089
Lal11g1126 363 ProSitePatterns Diaminopimelate epimerase signature. 142 156 IPR018510 GO:0005737|GO:0008837|GO:0009089
Lal11g1126 363 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 203 353 - -
Lal11g1126 363 TIGRFAM DapF: diaminopimelate epimerase 80 361 IPR001653 GO:0008837|GO:0009089
Lal11g1126 363 Pfam Diaminopimelate epimerase 235 356 IPR001653 GO:0008837|GO:0009089
Lal11g1126 363 Pfam Diaminopimelate epimerase 81 201 IPR001653 GO:0008837|GO:0009089
Lal11g1126 363 SUPERFAMILY Diaminopimelate epimerase-like 79 208 - -
Lal11g1126 363 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 72 202 - -
Lal11g1126 363 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 35 362 - -
Lal11g1126 363 SUPERFAMILY Diaminopimelate epimerase-like 223 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1126 Lal-Chr11 14998615 15003292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1126 K01778 - gmx:100784731 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1126 11 14998615 15003292 Lal20g0064 20 425409 431531 LSH