LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal1g1939	CGTATATGCTCCAGCCTGAAAATTAGGAAGAGTTTATATTACACAGGACAAAAAATATATGAATTTGGAAGAAGGAAGATGACAATGAAAGAAGTGAAAGAGGCACTGATTGGGGACCAGAAAGAAAGCAAAGGACATCCATGGATGGTTTACTTCACTACATTTGTTGCAGTTTGTGGTTCTTATGAATTTGGAGCTTGTGCTGGCTATTCATCTCCCACTCAATATGCTATCACTAATGATCTCAGTCTCTCTTTGGAAGAGTACTCCTTGTTCGGCTCCATCTTGACTTTTGGTGCGATGATTGGTGCAATAACAAGTGGACCTATTTCTGATTTTGTTGGACGAAAAGGGGCAATGAGAGTGTCGAGTGCTTTCTGTGTTGTAGGATGGCTTGTTATTTATCTCTCTGAGGGTCCAGTAACTTTGGACACTGGGAGGCTAGCAACAGGATATGGAATGGGTGTTTTTTCTTATGTGGTTCCTGTCTTCATAGCAGAAATTGCACCAAAAGATCTCCGAGGTGCACTGACTACCTTAAATCAGTTCATGATCGTTGCTGGAGTATCTGTGGCATACATAATTGGAACCTTACTTTCATGGAGGACTTTAGCTTTAACTGGCCTCATTCCCGCTGCTGTATTGCTTTTGGGTTTGTTTTTAATTCCGGAGTCTCCTAGATGGCTAGCAAAGAGAGGGCGTGAAGAAGATTTTGTGGCAGCACTACAGATACTTCGTGGTATAGATGCTGATATATCTCAAGAGGCAAATGAGATTCAGGATTATATAACTACTTCAGACCGGCTTCCAAAATCCAACCTTCTAGAATTGTTTCAGAGAAGATATCTGCGCTCGCTCACTATTGGAGTAGGGCTTATGCTCTGCCAGCAATTAGGAGGAATAAACGGAGTTGTCTTTTATACCAGCAGTATTTTTGAGCTCGCGGGTACTTCGAGAATTTCTATAGTCGTAACTGCATTTGGAGATCATCAAACTTTCTTACACGGCATCAGTTGTTTAAATTGCGGTTGTGGTCGCAATTGCGGTAACGGTTGCGGTTACTGCGATTGCGATCATTGCGACCGTTGCGATGCGGATTGCGGCCGTTGCGGATTTCCTTCTACCACCGGGACTATACTGTATGCTTGCCTTCAGGTTGTGATCACAGGTCTTGGTGCAGTATTGATAGATAAAGCTGGAAGGAAGCCCCTGTTACTGGTCTCTGGATCGGGTTTGGTCACTGGTTGTATACTTACAGCAGTTGCATTCTATCTTAAGGTTCAACAGGTGAGTATGGGGGCAGTCCCCGCACTTGCTTTAACTGGCATACTGGTCTACATAGGATCATTTTCAATTGGAATGGGAGCAATTCCATGGGTTGTGATGTCTGAGATATTTCCTATCAATATTAAAGGGCAGGCAGGAAGCATAGCTACATTAGTGAACTGGTTTGGTGCATGGTTATGTTCTTATACCTTCAACTTTCTAATGAGTTGGAGCTCCTATGGTACCTTCATTCTTTATGCTGCAATCAATGTACTAGCCATATTATTTATAGTTGTGGTAGTGCCAGAAACCAAGGGGAAAAGCCTGGAACAATTACAAGCAGTCATTAATGCATAG	1623	0.4276	RICSSLKIRKSLYYTGQKIYEFGRRKMTMKEVKEALIGDQKESKGHPWMVYFTTFVAVCGSYEFGACAGYSSPTQYAITNDLSLSLEEYSLFGSILTFGAMIGAITSGPISDFVGRKGAMRVSSAFCVVGWLVIYLSEGPVTLDTGRLATGYGMGVFSYVVPVFIAEIAPKDLRGALTTLNQFMIVAGVSVAYIIGTLLSWRTLALTGLIPAAVLLLGLFLIPESPRWLAKRGREEDFVAALQILRGIDADISQEANEIQDYITTSDRLPKSNLLELFQRRYLRSLTIGVGLMLCQQLGGINGVVFYTSSIFELAGTSRISIVVTAFGDHQTFLHGISCLNCGCGRNCGNGCGYCDCDHCDRCDADCGRCGFPSTTGTILYACLQVVITGLGAVLIDKAGRKPLLLVSGSGLVTGCILTAVAFYLKVQQVSMGAVPALALTGILVYIGSFSIGMGAIPWVVMSEIFPINIKGQAGSIATLVNWFGAWLCSYTFNFLMSWSSYGTFILYAAINVLAILFIVVVVPETKGKSLEQLQAVINA	540

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal1g1939	540	ProSitePatterns	Sugar transport proteins signature 1.	392	409	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal1g1939	540	PANTHER	-	369	538	-	-
	Lal1g1939	540	PANTHER	-	46	326	-	-
	Lal1g1939	540	ProSitePatterns	Sugar transport proteins signature 1.	107	124	IPR005829	GO:0016021\|GO:0022857\|GO:0055085
	Lal1g1939	540	CDD	MFS_GLUT6_8_Class3_like	51	533	IPR044775	GO:0008643\|GO:0051119
	Lal1g1939	540	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	49	527	IPR020846	GO:0022857
	Lal1g1939	540	PANTHER	SUGAR TRANSPORTER ERD6-LIKE 7	369	538	-	-
	Lal1g1939	540	PANTHER	SUGAR TRANSPORTER ERD6-LIKE 7	46	326	-	-
	Lal1g1939	540	Pfam	Sugar (and other) transporter	374	536	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Lal1g1939	540	Pfam	Sugar (and other) transporter	59	322	IPR005828	GO:0016021\|GO:0022857\|GO:0055085
	Lal1g1939	540	PRINTS	Sugar transporter signature	144	163	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal1g1939	540	PRINTS	Sugar transporter signature	296	306	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal1g1939	540	PRINTS	Sugar transporter signature	440	461	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal1g1939	540	PRINTS	Sugar transporter signature	463	475	IPR003663	GO:0016020\|GO:0022857\|GO:0055085
	Lal1g1939	540	Gene3D	MFS general substrate transporter like domains	43	340	IPR036259	-
	Lal1g1939	540	Gene3D	MFS general substrate transporter like domains	368	540	IPR036259	-
	Lal1g1939	540	SUPERFAMILY	MFS general substrate transporter	52	534	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal1g1939	Lal-Chr1	21518707	21523113	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal1g1939	17	539	Organic Solute Cotransporters	AT5G18840	52.190	0.0	525

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal1g1939	K03444		-	han:110884152	608.601

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal1g1939	1	21518707	21523113	Lal5g0122	5	1116371	1121628	ECH
	Lal1g1939	1	21518707	21523113	Lal1g1939	1	21518707	21523113	ECH