Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g1931 ATGAAAGTGGGAGGGATGAGGTACGGCGAAGGAATGAGAGTGGTGGTGGCCGGAGACAGAGGGAGCGGAAAATCAAGCCTGATATCTGCAATCGCATCTGAGTCATTCCCTGAGATTGTACCTCATTTGCTTCCACCCACTCATTTGCCTCCTGATCTCTTCCCTCACCATCTTCCTCTTACCATCATTGACACCTCTTCCACATTGGAAAAACAAGCGAAGCGTAACGAAGAATTGAAGCGAGCCGATGTAGTGGTTTTAACATATGCTTGCAATGATCCATCATCCTTTACGCGCTTGCCTTCTTATTGGCTTCCTGAATTACAAAACTTGGAGGTGAAGGCACCTGTAATTGTGGTTGGTTGCAAGCTAGACCTAAGAGATGAAAACCAACAAGTTAGCTTAGAGACTCTAATGCCTCAGCTCTTACAACATTGCAAGAATATCGCAACATGTATTGAATGCTCAGCATATACCTTATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTGCTGCATCCGTTAGATCCATTGTTTGATCATGAAAGCCAAGCTTTAACTGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGCGATCGCAACATGGATGATGCCCTCGATGATACAGAACTGAATGAATTTCAGGTTAGATGCTTCGGTGCACCATTGCAGTCATCTGAAATAGCAGGGGTCAAAACACTTGTTCAGCAGAAAGTACCTGAAGGACTCAACTCCCATGGTCTTACTTTTCCAGGATTTATTTATATCCATAAGATGTTTCTAAAGAAAGGGCGTCCAGAGACACTATGGGCTGTACTAAGAAACTTTGGATATGATAATGATTTAAAACTCCAGGATGATTTCCTTCCAATTCCATCTAAGATTGCCCCTGATCAGAGTGTGGAGCTGACCAGCGAAGCTATAGAGTTTCTGAGCGGTGTCTTCCGACTGTTAGATATGGATAAAGATCGAGCCCTTAGACCCGCTGAAGTTGATAAGCTATTTTGTACTGCTCCACAAAGTCCATGGAATGATGCTCCATATAAGGATGCAGCTGAGAGAACTGACATGGGTTACATGTCTCTTAACGGATTTCTATCCCTGTGGGCTCTTATGACATTAATTGATTCACGACGTAGCCTAGCTAATTTGATTTACATAGGATATAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGAAGATCAGTAGATCGCAGAAAGCAAGCAACCGAAAGGAATGTGTTCCAATGCTATGTTTTTGGTTCCAAAAATGCCGGGAAATCTGCTATTTTGGAATCATTGTTGGGGAGGCCTTTCTCAAATAATTATGCTCCAACAACAGTTGAGCAGTTTGCAGCAAATTCCATTGAATTACTAGGGGGAACTAGGAAAACTCTTGTATTGCGGGAGATACCAGAGGGTGCAGTATCGAAAGTTTTGTCAAATAAGGATTATTTGGCAACGTGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGGTTTGCTTGATATGGTTGCTAGACAAGGAGAACTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACTCCATACCCAAGGGCAGTACAAGATTCAGTCAGGGTTACTCAGGAACTGGGAATAGAGGCACCTATTCACCTAAGTATGAAATTAGGGGATTCAAGTAATGTGTACAATAAGATTGTTAGTGCTGCAGAACACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCAACAACTTCTTCAGAACTCTCTCATTTTTGCCTCAGTTGGGACCGTTGTGGCAGTTGTTGGTTTAGCAGCAATGCGTGCATATGCAGTGAAGAAAAATTCTTCTGCTTAG 1929 0.4235 MKVGGMRYGEGMRVVVAGDRGSGKSSLISAIASESFPEIVPHLLPPTHLPPDLFPHHLPLTIIDTSSTLEKQAKRNEELKRADVVVLTYACNDPSSFTRLPSYWLPELQNLEVKAPVIVVGCKLDLRDENQQVSLETLMPQLLQHCKNIATCIECSAYTLYQVPEVFYFAQKAVLHPLDPLFDHESQALTDRCVRALRRIFVLCDRNMDDALDDTELNEFQVRCFGAPLQSSEIAGVKTLVQQKVPEGLNSHGLTFPGFIYIHKMFLKKGRPETLWAVLRNFGYDNDLKLQDDFLPIPSKIAPDQSVELTSEAIEFLSGVFRLLDMDKDRALRPAEVDKLFCTAPQSPWNDAPYKDAAERTDMGYMSLNGFLSLWALMTLIDSRRSLANLIYIGYSGNPAAALRVTRRRSVDRRKQATERNVFQCYVFGSKNAGKSAILESLLGRPFSNNYAPTTVEQFAANSIELLGGTRKTLVLREIPEGAVSKVLSNKDYLATCDVAVFVYDSSDEHSWKKSRGLLDMVARQGELTGYRVPCLLIAAKDDLTPYPRAVQDSVRVTQELGIEAPIHLSMKLGDSSNVYNKIVSAAEHPHLSIPETEIGRKRKQYQQLLQNSLIFASVGTVVAVVGLAAMRAYAVKKNSSA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g1931 642 ProSiteProfiles Miro domain profile. 9 176 IPR020860 GO:0003924|GO:0005525
Lal1g1931 642 Pfam EF hand associated 228 312 IPR013567 -
Lal1g1931 642 PANTHER RHO FAMILY GTPASE 12 490 IPR003578 GO:0005525|GO:0007264
Lal1g1931 642 PANTHER MITOCHONDRIAL RHO GTPASE 12 490 - -
Lal1g1931 642 ProSiteProfiles Miro domain profile. 420 589 IPR020860 GO:0003924|GO:0005525
Lal1g1931 642 Gene3D - 290 480 - -
Lal1g1931 642 SUPERFAMILY EF-hand 187 377 IPR011992 -
Lal1g1931 642 SMART ras_sub_4 13 177 - -
Lal1g1931 642 CDD Miro2 419 598 - -
Lal1g1931 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 209 IPR027417 -
Lal1g1931 642 SMART rho_sub_3 14 177 IPR001806 GO:0003924|GO:0005525
Lal1g1931 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 593 IPR027417 -
Lal1g1931 642 Pfam Ras family 13 174 IPR001806 GO:0003924|GO:0005525
Lal1g1931 642 Pfam Ras family 427 552 IPR001806 GO:0003924|GO:0005525
Lal1g1931 642 Gene3D - 10 179 IPR027417 -
Lal1g1931 642 Gene3D - 184 288 - -
Lal1g1931 642 ProSitePatterns EF-hand calcium-binding domain. 205 217 IPR018247 -
Lal1g1931 642 Pfam EF hand associated 349 416 IPR013566 -
Lal1g1931 642 PIRSF Miro 9 642 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Lal1g1931 642 PRINTS Transforming protein P21 ras signature 12 33 - -
Lal1g1931 642 PRINTS Transforming protein P21 ras signature 113 126 - -
Lal1g1931 642 PRINTS Transforming protein P21 ras signature 152 174 - -
Lal1g1931 642 SMART rab_sub_5 12 177 - -
Lal1g1931 642 Gene3D - 486 587 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g1931 Lal-Chr1 21465817 21471130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g1931 1 640 EF-hand Containing Proteins AT3G63150 59.253 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g1931 K07870 - gmx:100782061 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g1931 1 21465817 21471130 Lal12g0212 12 1528335 1534531 PCT
Lal12g0212 12 1528335 1534531 Lal1g1931 1 21465817 21471130 PCT